miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 99798 0.66 0.982089
Target:  5'- -aCGAGcgcgcgCCGcggGCGcCGGCGCCGucGGCCg -3'
miRNA:   3'- caGCUCa-----GGU---UGUuGCUGCGGC--UCGG- -5'
10746 5' -54.2 NC_002794.1 + 117204 0.66 0.982089
Target:  5'- cGUCGGGcCCG--GGCGGCuCCG-GCCg -3'
miRNA:   3'- -CAGCUCaGGUugUUGCUGcGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 128434 0.66 0.982089
Target:  5'- -cCGGGUggCCcGCGcgcACGGCGCCuccgGAGCCc -3'
miRNA:   3'- caGCUCA--GGuUGU---UGCUGCGG----CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 169769 0.66 0.982089
Target:  5'- -aCGAGagacCCugUGGCGACGgCGAGCUa -3'
miRNA:   3'- caGCUCa---GGuuGUUGCUGCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 96866 0.66 0.982089
Target:  5'- cGUCGuGUCCucgacgGACggUGGCGCUacgGGGCa -3'
miRNA:   3'- -CAGCuCAGG------UUGuuGCUGCGG---CUCGg -5'
10746 5' -54.2 NC_002794.1 + 36617 0.66 0.982089
Target:  5'- -cCGAGaCCugcucGACGACGaACGCCGucggcuccggcAGCCg -3'
miRNA:   3'- caGCUCaGG-----UUGUUGC-UGCGGC-----------UCGG- -5'
10746 5' -54.2 NC_002794.1 + 38490 0.66 0.982089
Target:  5'- --gGAGgaagcGCGGCGGCGCCGGucGCCg -3'
miRNA:   3'- cagCUCaggu-UGUUGCUGCGGCU--CGG- -5'
10746 5' -54.2 NC_002794.1 + 104623 0.66 0.982089
Target:  5'- cUCG-G-CCAGCAGCucguugucgcGCGCCGAGCa -3'
miRNA:   3'- cAGCuCaGGUUGUUGc---------UGCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 23994 0.66 0.98189
Target:  5'- cGUCGcuccGUCCGACGggccgccgucaccGCGGCGCCucGGCg -3'
miRNA:   3'- -CAGCu---CAGGUUGU-------------UGCUGCGGc-UCGg -5'
10746 5' -54.2 NC_002794.1 + 185106 0.66 0.98189
Target:  5'- gGUCGuGUUguaCAGCAugugcacgaccagGCGGCGCCGcGUCg -3'
miRNA:   3'- -CAGCuCAG---GUUGU-------------UGCUGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 143251 0.66 0.981489
Target:  5'- cGUCGuggugcaggaggaaGGcCCGGCc-CGGCGCCG-GCCg -3'
miRNA:   3'- -CAGC--------------UCaGGUUGuuGCUGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 78092 0.66 0.981489
Target:  5'- cUCGccUCCGucgcgaaacGCGGCGGCGCCuccagacgccgcccGAGCCg -3'
miRNA:   3'- cAGCucAGGU---------UGUUGCUGCGG--------------CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 105900 0.66 0.980029
Target:  5'- --gGAGUCgccgCGGCGGCGGCGCUaccGCCg -3'
miRNA:   3'- cagCUCAG----GUUGUUGCUGCGGcu-CGG- -5'
10746 5' -54.2 NC_002794.1 + 94128 0.66 0.980029
Target:  5'- cGUCGuguuggaaGGUCCGaccGCGGCGGCGCUGgacGGUg -3'
miRNA:   3'- -CAGC--------UCAGGU---UGUUGCUGCGGC---UCGg -5'
10746 5' -54.2 NC_002794.1 + 80430 0.66 0.980029
Target:  5'- -gCGGGgccgCCGcCGGCGGcCGCCG-GCCc -3'
miRNA:   3'- caGCUCa---GGUuGUUGCU-GCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 59129 0.66 0.980029
Target:  5'- -cCGAGgCCGACuuCG-CGCaGGGCCg -3'
miRNA:   3'- caGCUCaGGUUGuuGCuGCGgCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 592 0.66 0.980029
Target:  5'- cUCG-GUCCGuu--CGugGCCGGGUg -3'
miRNA:   3'- cAGCuCAGGUuguuGCugCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 190713 0.66 0.980029
Target:  5'- cGUCGGGuucUCCAGCcggaGACGcaGCGCCc-GCCg -3'
miRNA:   3'- -CAGCUC---AGGUUG----UUGC--UGCGGcuCGG- -5'
10746 5' -54.2 NC_002794.1 + 147084 0.66 0.980029
Target:  5'- -cCG-GUCCAAgGACGaagGCGUCGGcGCCc -3'
miRNA:   3'- caGCuCAGGUUgUUGC---UGCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 51970 0.66 0.980029
Target:  5'- -cCGGGaCCGGCAucgUGGCGCUcGGCCg -3'
miRNA:   3'- caGCUCaGGUUGUu--GCUGCGGcUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.