miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 125379 1.11 0.004458
Target:  5'- cGUCGAGUCCAACAACGACGCCGAGCCc -3'
miRNA:   3'- -CAGCUCAGGUUGUUGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 67012 0.83 0.263078
Target:  5'- -aCGAGUCCGGCGGCGGCGgCCGGcucccGCCg -3'
miRNA:   3'- caGCUCAGGUUGUUGCUGC-GGCU-----CGG- -5'
10746 5' -54.2 NC_002794.1 + 116120 0.82 0.309192
Target:  5'- gGUCGAGUCCGccgcggcggcgGCGGCGGCGgCCaGGGCCu -3'
miRNA:   3'- -CAGCUCAGGU-----------UGUUGCUGC-GG-CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 112306 0.81 0.337449
Target:  5'- -cCGGGUCCGACuuCGGCGCCGAcggcggggagcgcGCCg -3'
miRNA:   3'- caGCUCAGGUUGuuGCUGCGGCU-------------CGG- -5'
10746 5' -54.2 NC_002794.1 + 16917 0.81 0.345751
Target:  5'- -cCGAGccgCCGACugucguCGGCGCCGAGCCg -3'
miRNA:   3'- caGCUCa--GGUUGuu----GCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 23967 0.8 0.353425
Target:  5'- -cCGAG-CCAGCGGCGAgGCCGGcGCCa -3'
miRNA:   3'- caGCUCaGGUUGUUGCUgCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 191552 0.79 0.419037
Target:  5'- aGUCGGGUCCGgguCcACGACGCCGcuucGCCg -3'
miRNA:   3'- -CAGCUCAGGUu--GuUGCUGCGGCu---CGG- -5'
10746 5' -54.2 NC_002794.1 + 23909 0.79 0.436559
Target:  5'- -cCGAGUgCAGCAGCGugGgCGAGCg -3'
miRNA:   3'- caGCUCAgGUUGUUGCugCgGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 83180 0.78 0.445477
Target:  5'- gGUCGAGcgcggcuucgCCAucaACAACG-CGCCGAGCCu -3'
miRNA:   3'- -CAGCUCa---------GGU---UGUUGCuGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 18378 0.78 0.472824
Target:  5'- uUCGAcucCCGGC-GCGAUGCCGAGCCa -3'
miRNA:   3'- cAGCUca-GGUUGuUGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 153590 0.78 0.481193
Target:  5'- -cCGGGUCCAACAcgcccuggaagagACGGCGC-GGGCCg -3'
miRNA:   3'- caGCUCAGGUUGU-------------UGCUGCGgCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 117036 0.77 0.510546
Target:  5'- -cCGGGUCCGACAgcACGAgGUaCGGGCCg -3'
miRNA:   3'- caGCUCAGGUUGU--UGCUgCG-GCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 134825 0.76 0.569273
Target:  5'- aUCG-GUCCAgcgACAGCGACGaagaaCCGGGCCc -3'
miRNA:   3'- cAGCuCAGGU---UGUUGCUGC-----GGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 138431 0.76 0.569273
Target:  5'- cGUCGAG-CCGcggugGCGGCGGCGCCucGGCCu -3'
miRNA:   3'- -CAGCUCaGGU-----UGUUGCUGCGGc-UCGG- -5'
10746 5' -54.2 NC_002794.1 + 119383 0.76 0.579244
Target:  5'- gGUCGAGcugggCCAGCAccUGGCGCCGcAGCCc -3'
miRNA:   3'- -CAGCUCa----GGUUGUu-GCUGCGGC-UCGG- -5'
10746 5' -54.2 NC_002794.1 + 59211 0.76 0.599292
Target:  5'- cGUCGGcGUCuCGGCcGCGGCGCgCGAGCUc -3'
miRNA:   3'- -CAGCU-CAG-GUUGuUGCUGCG-GCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 135461 0.75 0.623468
Target:  5'- -cCGGGgcccgcggCCGACGACGACGCCGccgucgacgcgcgcgGGCCc -3'
miRNA:   3'- caGCUCa-------GGUUGUUGCUGCGGC---------------UCGG- -5'
10746 5' -54.2 NC_002794.1 + 119502 0.75 0.629522
Target:  5'- cUCGGGgUCGuCGGCGGCGCgGAGCCg -3'
miRNA:   3'- cAGCUCaGGUuGUUGCUGCGgCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 63696 0.75 0.649697
Target:  5'- -aCGAugaCGACGACGGCGCCGGcGCCg -3'
miRNA:   3'- caGCUcagGUUGUUGCUGCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 140181 0.74 0.67383
Target:  5'- aUCGGGU-CGGCGACGGCGucgucgaggggcgacCCGGGCCg -3'
miRNA:   3'- cAGCUCAgGUUGUUGCUGC---------------GGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.