miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 153705 0.74 0.679837
Target:  5'- -cCG-GUUUAGCGAccgcgacgucacCGACGCCGAGCCg -3'
miRNA:   3'- caGCuCAGGUUGUU------------GCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 96727 0.74 0.683835
Target:  5'- -cCGAG-CCGGCGACGAcCGCCGgcgcgucucgcaagcGGCCg -3'
miRNA:   3'- caGCUCaGGUUGUUGCU-GCGGC---------------UCGG- -5'
10746 5' -54.2 NC_002794.1 + 150781 0.74 0.689819
Target:  5'- cGUCGGGcucgugcgacUCCAggccccGCGGCGGacgGCCGAGCCg -3'
miRNA:   3'- -CAGCUC----------AGGU------UGUUGCUg--CGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 44849 0.74 0.689819
Target:  5'- --aGAGUCC-ACcACGuCGUCGAGCCg -3'
miRNA:   3'- cagCUCAGGuUGuUGCuGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 154424 0.74 0.689819
Target:  5'- cUCGcaUCCGACAGguCG-CGCCGAGCCg -3'
miRNA:   3'- cAGCucAGGUUGUU--GCuGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 82458 0.74 0.689819
Target:  5'- gGUCG-GcCCGACcuCGACGCCGucGGCCu -3'
miRNA:   3'- -CAGCuCaGGUUGuuGCUGCGGC--UCGG- -5'
10746 5' -54.2 NC_002794.1 + 182955 0.74 0.693799
Target:  5'- cUCGAG-CCGACGGCGGCcggcuccucguucgaGCCGAcgGCCg -3'
miRNA:   3'- cAGCUCaGGUUGUUGCUG---------------CGGCU--CGG- -5'
10746 5' -54.2 NC_002794.1 + 18256 0.74 0.699754
Target:  5'- -cCGA--CCGGCGaccgcgagaugcGCGGCGCCGAGCCu -3'
miRNA:   3'- caGCUcaGGUUGU------------UGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 22690 0.74 0.699754
Target:  5'- -cCGGGUCCcuacgagagaaaAACAaaacGCGGCGCCGAgaGCCg -3'
miRNA:   3'- caGCUCAGG------------UUGU----UGCUGCGGCU--CGG- -5'
10746 5' -54.2 NC_002794.1 + 44187 0.73 0.709634
Target:  5'- cGUCGAcUCCG--GGCGAaGCCGGGCCg -3'
miRNA:   3'- -CAGCUcAGGUugUUGCUgCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 145797 0.73 0.709634
Target:  5'- -cCGGcUCgGACGACGACGCCGccGCCg -3'
miRNA:   3'- caGCUcAGgUUGUUGCUGCGGCu-CGG- -5'
10746 5' -54.2 NC_002794.1 + 62052 0.73 0.709634
Target:  5'- uGUCGGuGgccgacgCCGGCGGCGACGCCG-GCg -3'
miRNA:   3'- -CAGCU-Ca------GGUUGUUGCUGCGGCuCGg -5'
10746 5' -54.2 NC_002794.1 + 75651 0.73 0.71945
Target:  5'- -aCGAG--CGGCAGCGGCGCCGuccGCCg -3'
miRNA:   3'- caGCUCagGUUGUUGCUGCGGCu--CGG- -5'
10746 5' -54.2 NC_002794.1 + 111307 0.73 0.71945
Target:  5'- ---cAGcCCGACGGaGACGCCGGGCCa -3'
miRNA:   3'- cagcUCaGGUUGUUgCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 93797 0.73 0.729193
Target:  5'- cUCGAGUCCcacGACAGCagcucGACcCCGAGCUg -3'
miRNA:   3'- cAGCUCAGG---UUGUUG-----CUGcGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 92260 0.73 0.729193
Target:  5'- cGUCG---CUGGCGGCGGCGCCGGGCg -3'
miRNA:   3'- -CAGCucaGGUUGUUGCUGCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 123415 0.73 0.729193
Target:  5'- cGUgGAGUacgaCAGCGACGAggcggugaccguCGCCGAGCg -3'
miRNA:   3'- -CAgCUCAg---GUUGUUGCU------------GCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 121354 0.73 0.729193
Target:  5'- -cCGggaAGUUCGuCGACGGCGuCCGAGCCg -3'
miRNA:   3'- caGC---UCAGGUuGUUGCUGC-GGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 120983 0.73 0.738854
Target:  5'- -gCGAGUUCGuguAGCGGCGgCGGGCCa -3'
miRNA:   3'- caGCUCAGGUug-UUGCUGCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 52890 0.73 0.748425
Target:  5'- gGUgGGGUCgAAC-GCGGCGCCGccGCCg -3'
miRNA:   3'- -CAgCUCAGgUUGuUGCUGCGGCu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.