miRNA display CGI


Results 21 - 40 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 94128 0.66 0.980029
Target:  5'- cGUCGuguuggaaGGUCCGaccGCGGCGGCGCUGgacGGUg -3'
miRNA:   3'- -CAGC--------UCAGGU---UGUUGCUGCGGC---UCGg -5'
10746 5' -54.2 NC_002794.1 + 80430 0.66 0.980029
Target:  5'- -gCGGGgccgCCGcCGGCGGcCGCCG-GCCc -3'
miRNA:   3'- caGCUCa---GGUuGUUGCU-GCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 59129 0.66 0.980029
Target:  5'- -cCGAGgCCGACuuCG-CGCaGGGCCg -3'
miRNA:   3'- caGCUCaGGUUGuuGCuGCGgCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 592 0.66 0.980029
Target:  5'- cUCG-GUCCGuu--CGugGCCGGGUg -3'
miRNA:   3'- cAGCuCAGGUuguuGCugCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 190713 0.66 0.980029
Target:  5'- cGUCGGGuucUCCAGCcggaGACGcaGCGCCc-GCCg -3'
miRNA:   3'- -CAGCUC---AGGUUG----UUGC--UGCGGcuCGG- -5'
10746 5' -54.2 NC_002794.1 + 147084 0.66 0.980029
Target:  5'- -cCG-GUCCAAgGACGaagGCGUCGGcGCCc -3'
miRNA:   3'- caGCuCAGGUUgUUGC---UGCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 135972 0.66 0.980029
Target:  5'- cUCGAG-CC-----CGGCGCCGGGCUc -3'
miRNA:   3'- cAGCUCaGGuuguuGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 48143 0.66 0.979814
Target:  5'- nUCGaAGcCCucgacgaGGCAGCGGCGCCGcuucacGCCg -3'
miRNA:   3'- cAGC-UCaGG-------UUGUUGCUGCGGCu-----CGG- -5'
10746 5' -54.2 NC_002794.1 + 80485 0.66 0.979814
Target:  5'- cGUCGAGcuggcgcaccaCCGGCAcgucuucugcgccGCGGCGCgCGAcGCCu -3'
miRNA:   3'- -CAGCUCa----------GGUUGU-------------UGCUGCG-GCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 188864 0.66 0.979814
Target:  5'- gGUCGucGUCCGACAgcagcaggaACGGCcagcaguGgCGGGCCa -3'
miRNA:   3'- -CAGCu-CAGGUUGU---------UGCUG-------CgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 53611 0.66 0.978712
Target:  5'- -cCGGG-CCGccGCAGCGuCggacggacgaggucgGCCGAGCCg -3'
miRNA:   3'- caGCUCaGGU--UGUUGCuG---------------CGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 147331 0.66 0.977799
Target:  5'- uUCGGGgCCGAUcuCGuGCGCCGcuGCCa -3'
miRNA:   3'- cAGCUCaGGUUGuuGC-UGCGGCu-CGG- -5'
10746 5' -54.2 NC_002794.1 + 31914 0.66 0.977799
Target:  5'- -aUGAGcgCCGACAG-GACGUCcAGCCg -3'
miRNA:   3'- caGCUCa-GGUUGUUgCUGCGGcUCGG- -5'
10746 5' -54.2 NC_002794.1 + 169129 0.66 0.977799
Target:  5'- -cCGGGUCCuGACcgguCGGCGCuaCGAGUCu -3'
miRNA:   3'- caGCUCAGG-UUGuu--GCUGCG--GCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 115071 0.66 0.977799
Target:  5'- cGUCcAGUCCAcggccuCGGCGGcCGCCcGcAGCCg -3'
miRNA:   3'- -CAGcUCAGGUu-----GUUGCU-GCGG-C-UCGG- -5'
10746 5' -54.2 NC_002794.1 + 102144 0.66 0.977799
Target:  5'- uUCGuGcgcUUCGGCGGCGugcGCGCCgGGGCCa -3'
miRNA:   3'- cAGCuC---AGGUUGUUGC---UGCGG-CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 128305 0.66 0.977799
Target:  5'- -cCGAGa-CGGCGACcguGGCGaCCGAGCCc -3'
miRNA:   3'- caGCUCagGUUGUUG---CUGC-GGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 12173 0.66 0.977799
Target:  5'- aUCGucgCCGcCGACGcCGCCGcGGCCg -3'
miRNA:   3'- cAGCucaGGUuGUUGCuGCGGC-UCGG- -5'
10746 5' -54.2 NC_002794.1 + 60940 0.66 0.977799
Target:  5'- aUCGGccugcaccgCCugcuCGACGAgCGCCGGGCCu -3'
miRNA:   3'- cAGCUca-------GGuu--GUUGCU-GCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 150196 0.66 0.977799
Target:  5'- gGUgGGGcCUcACGACGAgcggcugcUGCCGAGCUg -3'
miRNA:   3'- -CAgCUCaGGuUGUUGCU--------GCGGCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.