miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 60940 0.66 0.977799
Target:  5'- aUCGGccugcaccgCCugcuCGACGAgCGCCGGGCCu -3'
miRNA:   3'- cAGCUca-------GGuu--GUUGCU-GCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 58017 0.66 0.977799
Target:  5'- -cCGGGgccgCCGcCGGCGAaccCGCCGcGCCg -3'
miRNA:   3'- caGCUCa---GGUuGUUGCU---GCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 90966 0.66 0.977566
Target:  5'- -cCGGGcCCGcuuCGGCGugGCCucguaccGGGCCg -3'
miRNA:   3'- caGCUCaGGUu--GUUGCugCGG-------CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 36899 0.66 0.97539
Target:  5'- --aGAgcGUCCAGaggucGCGGCGCCG-GCCc -3'
miRNA:   3'- cagCU--CAGGUUgu---UGCUGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 62493 0.66 0.97539
Target:  5'- -gCGAGUggaCGGCgGGCGGCGCCGccggcGCCu -3'
miRNA:   3'- caGCUCAg--GUUG-UUGCUGCGGCu----CGG- -5'
10746 5' -54.2 NC_002794.1 + 115908 0.66 0.97539
Target:  5'- --gGGGUUCGugGgguggacuuggcGCGGCGgCGGGCCg -3'
miRNA:   3'- cagCUCAGGUugU------------UGCUGCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 72445 0.66 0.97539
Target:  5'- --aGGGaCCGGCGGCGccccGCGCCcGGCCc -3'
miRNA:   3'- cagCUCaGGUUGUUGC----UGCGGcUCGG- -5'
10746 5' -54.2 NC_002794.1 + 142468 0.66 0.97539
Target:  5'- -aUGAGcgCCGGCAccguggacgcguGCGGCGCCG-GCa -3'
miRNA:   3'- caGCUCa-GGUUGU------------UGCUGCGGCuCGg -5'
10746 5' -54.2 NC_002794.1 + 103562 0.66 0.97539
Target:  5'- -aUGGcGUCCGACGcCGugGCCGAcgaGCa -3'
miRNA:   3'- caGCU-CAGGUUGUuGCugCGGCU---CGg -5'
10746 5' -54.2 NC_002794.1 + 48541 0.66 0.97539
Target:  5'- cUCGGGUcggCCGACcACucCGCCG-GCCg -3'
miRNA:   3'- cAGCUCA---GGUUGuUGcuGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 145306 0.66 0.97539
Target:  5'- uGUCGuauuaaaCCGGCGcgcggcggGCGGCGCuCGGGCCc -3'
miRNA:   3'- -CAGCuca----GGUUGU--------UGCUGCG-GCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 148791 0.66 0.97539
Target:  5'- -cCG-GUCC-GCAcCGuCGCCGAGCa -3'
miRNA:   3'- caGCuCAGGuUGUuGCuGCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 20901 0.66 0.972795
Target:  5'- cGUCGGGaaCGACcACuuuCGCCGAGCg -3'
miRNA:   3'- -CAGCUCagGUUGuUGcu-GCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 37173 0.66 0.972795
Target:  5'- aUCGGGaccUCCAguuucccgcacGCGcccACGACGUCGGGCa -3'
miRNA:   3'- cAGCUC---AGGU-----------UGU---UGCUGCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 194935 0.66 0.972795
Target:  5'- -aCcAGcUCCGACGGCGACGUCGucAGCa -3'
miRNA:   3'- caGcUC-AGGUUGUUGCUGCGGC--UCGg -5'
10746 5' -54.2 NC_002794.1 + 78577 0.66 0.972795
Target:  5'- cUCGAGgcucucgccuUCCGACAugGuaaacuCGCCGA-CCa -3'
miRNA:   3'- cAGCUC----------AGGUUGUugCu-----GCGGCUcGG- -5'
10746 5' -54.2 NC_002794.1 + 44484 0.66 0.972795
Target:  5'- cGUCGAaacagagacguuGUCUcACGGCGGCccagaCCGGGCCc -3'
miRNA:   3'- -CAGCU------------CAGGuUGUUGCUGc----GGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 130299 0.66 0.972795
Target:  5'- -cCGGGUCCGgaACGGCGAgaUGuCCuGGCCg -3'
miRNA:   3'- caGCUCAGGU--UGUUGCU--GC-GGcUCGG- -5'
10746 5' -54.2 NC_002794.1 + 91008 0.66 0.972795
Target:  5'- -gCGGG-CCGACAcCGACuucaCCGAGCUc -3'
miRNA:   3'- caGCUCaGGUUGUuGCUGc---GGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 187565 0.66 0.971979
Target:  5'- cGUCGGGcCCGuacccgccgucggcGCGgccgccgucGCGACGCCcggcgucgcccaGAGCCg -3'
miRNA:   3'- -CAGCUCaGGU--------------UGU---------UGCUGCGG------------CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.