miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 592 0.66 0.980029
Target:  5'- cUCG-GUCCGuu--CGugGCCGGGUg -3'
miRNA:   3'- cAGCuCAGGUuguuGCugCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 5392 0.67 0.956822
Target:  5'- gGUCGAaUCCAucca-GACaCCGAGCCa -3'
miRNA:   3'- -CAGCUcAGGUuguugCUGcGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 6516 0.67 0.956822
Target:  5'- gGUgGAGUCCAcCuguUGAUGgaCCGGGCCg -3'
miRNA:   3'- -CAgCUCAGGUuGuu-GCUGC--GGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 10761 0.71 0.837253
Target:  5'- -aCGAGa-CGACGGCGGCGUgGAGCUg -3'
miRNA:   3'- caGCUCagGUUGUUGCUGCGgCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 11648 0.7 0.882387
Target:  5'- -aCGGGcggCCGACGACGcggccCGCCG-GCCa -3'
miRNA:   3'- caGCUCa--GGUUGUUGCu----GCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 12173 0.66 0.977799
Target:  5'- aUCGucgCCGcCGACGcCGCCGcGGCCg -3'
miRNA:   3'- cAGCucaGGUuGUUGCuGCGGC-UCGG- -5'
10746 5' -54.2 NC_002794.1 + 12225 0.7 0.889184
Target:  5'- cGUCGGcGgcgCCGGCGgcgccguccGCGGCGCCGAuCCg -3'
miRNA:   3'- -CAGCU-Ca--GGUUGU---------UGCUGCGGCUcGG- -5'
10746 5' -54.2 NC_002794.1 + 14378 0.67 0.967023
Target:  5'- uGUCG-GUCCGAguCAACGucuC-CCGAGUCa -3'
miRNA:   3'- -CAGCuCAGGUU--GUUGCu--GcGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 14464 0.66 0.970008
Target:  5'- -cCGuGUCgAGCGGCG-CGCCGcGCUc -3'
miRNA:   3'- caGCuCAGgUUGUUGCuGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 14621 0.68 0.948936
Target:  5'- -aCGGGgCCGGaGACGGgGCCGGGCa -3'
miRNA:   3'- caGCUCaGGUUgUUGCUgCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 14666 0.7 0.882387
Target:  5'- cGUCG-GUCCGACucGCGGCGgCG-GUCg -3'
miRNA:   3'- -CAGCuCAGGUUGu-UGCUGCgGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 16408 0.67 0.960435
Target:  5'- cGUCGAcUCUuggcguuaccgGACc-CGACGCCGAGUCc -3'
miRNA:   3'- -CAGCUcAGG-----------UUGuuGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 16789 0.68 0.948936
Target:  5'- -cCGAcgCCAAaucgcCGACGACGCCcAGCCg -3'
miRNA:   3'- caGCUcaGGUU-----GUUGCUGCGGcUCGG- -5'
10746 5' -54.2 NC_002794.1 + 16917 0.81 0.345751
Target:  5'- -cCGAGccgCCGACugucguCGGCGCCGAGCCg -3'
miRNA:   3'- caGCUCa--GGUUGuu----GCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 18177 0.67 0.967023
Target:  5'- -aUGAcGUUCAuccgccaccGCGACGAgGCCGAcGCCu -3'
miRNA:   3'- caGCU-CAGGU---------UGUUGCUgCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 18256 0.74 0.699754
Target:  5'- -cCGA--CCGGCGaccgcgagaugcGCGGCGCCGAGCCu -3'
miRNA:   3'- caGCUcaGGUUGU------------UGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 18378 0.78 0.472824
Target:  5'- uUCGAcucCCGGC-GCGAUGCCGAGCCa -3'
miRNA:   3'- cAGCUca-GGUUGuUGCUGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 20901 0.66 0.972795
Target:  5'- cGUCGGGaaCGACcACuuuCGCCGAGCg -3'
miRNA:   3'- -CAGCUCagGUUGuUGcu-GCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 22590 0.66 0.980029
Target:  5'- aGUCGcGcUCGGCAcggucGgGACGCuCGAGCCg -3'
miRNA:   3'- -CAGCuCaGGUUGU-----UgCUGCG-GCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 22690 0.74 0.699754
Target:  5'- -cCGGGUCCcuacgagagaaaAACAaaacGCGGCGCCGAgaGCCg -3'
miRNA:   3'- caGCUCAGG------------UUGU----UGCUGCGGCU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.