miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 23909 0.79 0.436559
Target:  5'- -cCGAGUgCAGCAGCGugGgCGAGCg -3'
miRNA:   3'- caGCUCAgGUUGUUGCugCgGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 23967 0.8 0.353425
Target:  5'- -cCGAG-CCAGCGGCGAgGCCGGcGCCa -3'
miRNA:   3'- caGCUCaGGUUGUUGCUgCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 23994 0.66 0.98189
Target:  5'- cGUCGcuccGUCCGACGggccgccgucaccGCGGCGCCucGGCg -3'
miRNA:   3'- -CAGCu---CAGGUUGU-------------UGCUGCGGc-UCGg -5'
10746 5' -54.2 NC_002794.1 + 25507 0.68 0.935409
Target:  5'- aUCGcaaCCAACcGCGACGCUgacgGAGCCu -3'
miRNA:   3'- cAGCucaGGUUGuUGCUGCGG----CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 29204 0.69 0.925237
Target:  5'- cGUCc-GUCCGGCGGuCGGCGgCCGucGGCCg -3'
miRNA:   3'- -CAGcuCAGGUUGUU-GCUGC-GGC--UCGG- -5'
10746 5' -54.2 NC_002794.1 + 29277 0.69 0.919802
Target:  5'- uUCGuccGUCCGuucACAGCGACaGCCaggaugacgaagGAGCCa -3'
miRNA:   3'- cAGCu--CAGGU---UGUUGCUG-CGG------------CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 29912 0.68 0.930439
Target:  5'- --aGGGaCCGACGACGggcaGCGaCGAGCCg -3'
miRNA:   3'- cagCUCaGGUUGUUGC----UGCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 31914 0.66 0.977799
Target:  5'- -aUGAGcgCCGACAG-GACGUCcAGCCg -3'
miRNA:   3'- caGCUCa-GGUUGUUgCUGCGGcUCGG- -5'
10746 5' -54.2 NC_002794.1 + 31981 0.67 0.960435
Target:  5'- cUCGAGcgCCucggucuGCGugGgCGAGCCg -3'
miRNA:   3'- cAGCUCa-GGuugu---UGCugCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 32266 0.67 0.95299
Target:  5'- cUCGAcggCCGGCcgaucggcgAGCGACGCCGccGCCg -3'
miRNA:   3'- cAGCUca-GGUUG---------UUGCUGCGGCu-CGG- -5'
10746 5' -54.2 NC_002794.1 + 32621 0.67 0.960435
Target:  5'- aUCGGGcccgCCGACGaagagggggGCGACGaCCGGGgCg -3'
miRNA:   3'- cAGCUCa---GGUUGU---------UGCUGC-GGCUCgG- -5'
10746 5' -54.2 NC_002794.1 + 32848 0.68 0.948936
Target:  5'- aUCG-GUagCGGCAGCG--GCCGAGCCg -3'
miRNA:   3'- cAGCuCAg-GUUGUUGCugCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 33016 0.69 0.925237
Target:  5'- uUCGcGUCguACcuCGACGCCcgcgGAGCCg -3'
miRNA:   3'- cAGCuCAGguUGuuGCUGCGG----CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 34792 0.66 0.970008
Target:  5'- -cCGAGUCgGcCGAacCGGC-CCGGGCCg -3'
miRNA:   3'- caGCUCAGgUuGUU--GCUGcGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 35492 0.71 0.845266
Target:  5'- cGUCGAGgaCCAGCAGguggUGGcCGCCGuGCCc -3'
miRNA:   3'- -CAGCUCa-GGUUGUU----GCU-GCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 36617 0.66 0.982089
Target:  5'- -cCGAGaCCugcucGACGACGaACGCCGucggcuccggcAGCCg -3'
miRNA:   3'- caGCUCaGG-----UUGUUGC-UGCGGC-----------UCGG- -5'
10746 5' -54.2 NC_002794.1 + 36899 0.66 0.97539
Target:  5'- --aGAgcGUCCAGaggucGCGGCGCCG-GCCc -3'
miRNA:   3'- cagCU--CAGGUUgu---UGCUGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 37173 0.66 0.972795
Target:  5'- aUCGGGaccUCCAguuucccgcacGCGcccACGACGUCGGGCa -3'
miRNA:   3'- cAGCUC---AGGU-----------UGU---UGCUGCGGCUCGg -5'
10746 5' -54.2 NC_002794.1 + 37980 0.72 0.776508
Target:  5'- -aCGAG-CCGAUcGCGGucaGCCGGGCCa -3'
miRNA:   3'- caGCUCaGGUUGuUGCUg--CGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 38416 0.67 0.95299
Target:  5'- -gCGAGcgcucgCCGACuccAUGGCGgCGGGCCg -3'
miRNA:   3'- caGCUCa-----GGUUGu--UGCUGCgGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.