miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 5' -54.2 NC_002794.1 + 195619 0.69 0.902113
Target:  5'- cGUCcGGcCCAAacggcCGGCGACGaCGAGCCg -3'
miRNA:   3'- -CAGcUCaGGUU-----GUUGCUGCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 194935 0.66 0.972795
Target:  5'- -aCcAGcUCCGACGGCGACGUCGucAGCa -3'
miRNA:   3'- caGcUC-AGGUUGUUGCUGCGGC--UCGg -5'
10746 5' -54.2 NC_002794.1 + 193817 0.66 0.970008
Target:  5'- cGUCuGGcgCCGACGcgucGCGGCGCCG-GCa -3'
miRNA:   3'- -CAGcUCa-GGUUGU----UGCUGCGGCuCGg -5'
10746 5' -54.2 NC_002794.1 + 193787 0.68 0.930439
Target:  5'- cUCGAucgCC--CGACGACGCCGGcGCCc -3'
miRNA:   3'- cAGCUca-GGuuGUUGCUGCGGCU-CGG- -5'
10746 5' -54.2 NC_002794.1 + 193601 0.69 0.908239
Target:  5'- cGUCGuGUagCguACcGCGGCGCCGuGGCCa -3'
miRNA:   3'- -CAGCuCA--GguUGuUGCUGCGGC-UCGG- -5'
10746 5' -54.2 NC_002794.1 + 192930 0.69 0.89576
Target:  5'- aUCGAGaugaacggCCAGCAGCuGCGCagacaggccgaCGAGCCg -3'
miRNA:   3'- cAGCUCa-------GGUUGUUGcUGCG-----------GCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 192631 0.68 0.939684
Target:  5'- aGUCGGGcggccgcUCCAGCcGCGcCGCCGcGCg -3'
miRNA:   3'- -CAGCUC-------AGGUUGuUGCuGCGGCuCGg -5'
10746 5' -54.2 NC_002794.1 + 192428 0.68 0.950584
Target:  5'- -aCGGGUCCGcggccggcgcgucgcGCGccucgcagucgcGCGccaccaGCGCCGAGCCc -3'
miRNA:   3'- caGCUCAGGU---------------UGU------------UGC------UGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 191643 0.7 0.889184
Target:  5'- cUCGccGUCCAGCAgcccgccgggggACGGCGCCG-GCa -3'
miRNA:   3'- cAGCu-CAGGUUGU------------UGCUGCGGCuCGg -5'
10746 5' -54.2 NC_002794.1 + 191552 0.79 0.419037
Target:  5'- aGUCGGGUCCGgguCcACGACGCCGcuucGCCg -3'
miRNA:   3'- -CAGCUCAGGUu--GuUGCUGCGGCu---CGG- -5'
10746 5' -54.2 NC_002794.1 + 190713 0.66 0.980029
Target:  5'- cGUCGGGuucUCCAGCcggaGACGcaGCGCCc-GCCg -3'
miRNA:   3'- -CAGCUC---AGGUUG----UUGC--UGCGGcuCGG- -5'
10746 5' -54.2 NC_002794.1 + 189455 0.67 0.967023
Target:  5'- aGUCG-G-CCAGC-ACG-CGCCGAaagGCCg -3'
miRNA:   3'- -CAGCuCaGGUUGuUGCuGCGGCU---CGG- -5'
10746 5' -54.2 NC_002794.1 + 188864 0.66 0.979814
Target:  5'- gGUCGucGUCCGACAgcagcaggaACGGCcagcaguGgCGGGCCa -3'
miRNA:   3'- -CAGCu-CAGGUUGU---------UGCUG-------CgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 188331 0.69 0.902113
Target:  5'- cGUCGccgCCGcCGGCGGCGCCGucgcGCCc -3'
miRNA:   3'- -CAGCucaGGUuGUUGCUGCGGCu---CGG- -5'
10746 5' -54.2 NC_002794.1 + 188244 0.69 0.914136
Target:  5'- cGUCGA--CCGGCGGCGgcggcgguaGCGgCGGGCCg -3'
miRNA:   3'- -CAGCUcaGGUUGUUGC---------UGCgGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 187565 0.66 0.971979
Target:  5'- cGUCGGGcCCGuacccgccgucggcGCGgccgccgucGCGACGCCcggcgucgcccaGAGCCg -3'
miRNA:   3'- -CAGCUCaGGU--------------UGU---------UGCUGCGG------------CUCGG- -5'
10746 5' -54.2 NC_002794.1 + 187463 0.71 0.812155
Target:  5'- cUCGGcGUCgcuCGGCGcGCGCCGGGCCg -3'
miRNA:   3'- cAGCU-CAGguuGUUGC-UGCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 185980 0.66 0.970008
Target:  5'- -cCGGGUCCGcCAcCGucuccucCGCCGGGCUc -3'
miRNA:   3'- caGCUCAGGUuGUuGCu------GCGGCUCGG- -5'
10746 5' -54.2 NC_002794.1 + 185249 0.67 0.963834
Target:  5'- -aCGAGagaaagcgCCAGCgGACGcCGCCG-GCCg -3'
miRNA:   3'- caGCUCa-------GGUUG-UUGCuGCGGCuCGG- -5'
10746 5' -54.2 NC_002794.1 + 185106 0.66 0.98189
Target:  5'- gGUCGuGUUguaCAGCAugugcacgaccagGCGGCGCCGcGUCg -3'
miRNA:   3'- -CAGCuCAG---GUUGU-------------UGCUGCGGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.