miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10747 3' -52.2 NC_002794.1 + 141315 0.66 0.988862
Target:  5'- cGACggCACCGgcg---UCGGCUCGGUg -3'
miRNA:   3'- -CUGaaGUGGUaccucaAGUCGAGCCG- -5'
10747 3' -52.2 NC_002794.1 + 32890 0.66 0.988862
Target:  5'- cGGCggCAUCAUGGAGcggaacCAGUcgggCGGCa -3'
miRNA:   3'- -CUGaaGUGGUACCUCaa----GUCGa---GCCG- -5'
10747 3' -52.2 NC_002794.1 + 132111 0.66 0.988862
Target:  5'- -----uGCCAUGGGGUggacggUCGGCU-GGCa -3'
miRNA:   3'- cugaagUGGUACCUCA------AGUCGAgCCG- -5'
10747 3' -52.2 NC_002794.1 + 117864 0.67 0.982001
Target:  5'- gGGCUggcgCGCCAgGGAGcUCAGgaUGGUg -3'
miRNA:   3'- -CUGAa---GUGGUaCCUCaAGUCgaGCCG- -5'
10747 3' -52.2 NC_002794.1 + 100531 0.67 0.979872
Target:  5'- cGGCggCACCGaGGAG--CAGCgggCGGCc -3'
miRNA:   3'- -CUGaaGUGGUaCCUCaaGUCGa--GCCG- -5'
10747 3' -52.2 NC_002794.1 + 110498 0.67 0.977562
Target:  5'- uGGCggCGCC-UGGAGaaagUCGGUcgagaUCGGCg -3'
miRNA:   3'- -CUGaaGUGGuACCUCa---AGUCG-----AGCCG- -5'
10747 3' -52.2 NC_002794.1 + 186511 0.68 0.975063
Target:  5'- ----cCGCCGUGGAag-CAGCgCGGCa -3'
miRNA:   3'- cugaaGUGGUACCUcaaGUCGaGCCG- -5'
10747 3' -52.2 NC_002794.1 + 115545 0.68 0.975063
Target:  5'- ---gUCGuCCAgcucgggGGAGUagccgagCAGCUCGGCg -3'
miRNA:   3'- cugaAGU-GGUa------CCUCAa------GUCGAGCCG- -5'
10747 3' -52.2 NC_002794.1 + 91157 0.68 0.966353
Target:  5'- uGCUgggCGCCGUGGAGgccUUCaAGCUcccccuguaccCGGCg -3'
miRNA:   3'- cUGAa--GUGGUACCUC---AAG-UCGA-----------GCCG- -5'
10747 3' -52.2 NC_002794.1 + 86828 0.69 0.955691
Target:  5'- cGACcUCGCCG-GGA--UCGGgUCGGCg -3'
miRNA:   3'- -CUGaAGUGGUaCCUcaAGUCgAGCCG- -5'
10747 3' -52.2 NC_002794.1 + 98976 0.69 0.94294
Target:  5'- cGGCggCGCCGUGGcc-UCGGUggUCGGCg -3'
miRNA:   3'- -CUGaaGUGGUACCucaAGUCG--AGCCG- -5'
10747 3' -52.2 NC_002794.1 + 31305 0.7 0.933233
Target:  5'- ---aUCugCAUGGucaagagcgugAGUcucgUCGGCUCGGCg -3'
miRNA:   3'- cugaAGugGUACC-----------UCA----AGUCGAGCCG- -5'
10747 3' -52.2 NC_002794.1 + 92324 0.7 0.933233
Target:  5'- cGGCggggGCCcgGGcGggCGGCUCGGCg -3'
miRNA:   3'- -CUGaag-UGGuaCCuCaaGUCGAGCCG- -5'
10747 3' -52.2 NC_002794.1 + 118897 0.7 0.927477
Target:  5'- gGugUUCgcguagguccgugGCgGUGGGGUUCAGCaggCGGUa -3'
miRNA:   3'- -CugAAG-------------UGgUACCUCAAGUCGa--GCCG- -5'
10747 3' -52.2 NC_002794.1 + 57112 0.7 0.916833
Target:  5'- cGGCcgaCGCCAUGGAGcgCGGCcUGGUg -3'
miRNA:   3'- -CUGaa-GUGGUACCUCaaGUCGaGCCG- -5'
10747 3' -52.2 NC_002794.1 + 132591 0.7 0.910876
Target:  5'- cGCUUCACCG-GGcgugacguGGUUCAGCg-GGCg -3'
miRNA:   3'- cUGAAGUGGUaCC--------UCAAGUCGagCCG- -5'
10747 3' -52.2 NC_002794.1 + 124860 1.13 0.004345
Target:  5'- cGACUUCACCAUGGAGUUCAGCUCGGCg -3'
miRNA:   3'- -CUGAAGUGGUACCUCAAGUCGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.