miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10747 5' -62 NC_002794.1 + 114366 0.66 0.744829
Target:  5'- gGGCCGGcuGCaGGgCCGCGuAGGCCu -3'
miRNA:   3'- gCCGGUCcuCGaCCaGGCGC-UCUGGc -5'
10747 5' -62 NC_002794.1 + 192401 0.66 0.743917
Target:  5'- cCGcGCCGGGGuagucgaaacgccGCgacgGGUCCGCG--GCCGg -3'
miRNA:   3'- -GC-CGGUCCU-------------CGa---CCAGGCGCucUGGC- -5'
10747 5' -62 NC_002794.1 + 183161 0.66 0.743917
Target:  5'- gCGGCCGGGcugcccgAGCcGGUC-G-GGGACCGa -3'
miRNA:   3'- -GCCGGUCC-------UCGaCCAGgCgCUCUGGC- -5'
10747 5' -62 NC_002794.1 + 60517 0.66 0.741177
Target:  5'- aCGGCacggAGGGGCUGGUggagaagCCGUgccagcucuuccagGAGGCCu -3'
miRNA:   3'- -GCCGg---UCCUCGACCA-------GGCG--------------CUCUGGc -5'
10747 5' -62 NC_002794.1 + 95744 0.66 0.735673
Target:  5'- uGGaCGGG-GCUGGUacUCGCGGGGCgGc -3'
miRNA:   3'- gCCgGUCCuCGACCA--GGCGCUCUGgC- -5'
10747 5' -62 NC_002794.1 + 120743 0.66 0.735673
Target:  5'- gCGGuCCGGGAgcgcagacucuGCUGGcccugCUGCGAcGCCGa -3'
miRNA:   3'- -GCC-GGUCCU-----------CGACCa----GGCGCUcUGGC- -5'
10747 5' -62 NC_002794.1 + 113547 0.66 0.726439
Target:  5'- cCGGCCcGGAGCaGG--CGCcGGACCGu -3'
miRNA:   3'- -GCCGGuCCUCGaCCagGCGcUCUGGC- -5'
10747 5' -62 NC_002794.1 + 119515 0.66 0.726439
Target:  5'- gCGGCgC-GGAGCcGG-CCGCG-GACCc -3'
miRNA:   3'- -GCCG-GuCCUCGaCCaGGCGCuCUGGc -5'
10747 5' -62 NC_002794.1 + 186295 0.66 0.726439
Target:  5'- gCGGCCAGGcGGCcGGUcgCCGCGGcGCg- -3'
miRNA:   3'- -GCCGGUCC-UCGaCCA--GGCGCUcUGgc -5'
10747 5' -62 NC_002794.1 + 151514 0.66 0.717132
Target:  5'- uCGGuUCGGGuGGcCUGGUgCGCcAGACCGg -3'
miRNA:   3'- -GCC-GGUCC-UC-GACCAgGCGcUCUGGC- -5'
10747 5' -62 NC_002794.1 + 10640 0.66 0.717132
Target:  5'- gGGCgGGGAGC-GG--CGCGAGcCCGa -3'
miRNA:   3'- gCCGgUCCUCGaCCagGCGCUCuGGC- -5'
10747 5' -62 NC_002794.1 + 44267 0.66 0.707762
Target:  5'- uCGGCCGccGGGGaCggagGaGUCCGCGcccgccGGGCCGg -3'
miRNA:   3'- -GCCGGU--CCUC-Ga---C-CAGGCGC------UCUGGC- -5'
10747 5' -62 NC_002794.1 + 23946 0.66 0.698334
Target:  5'- cCGGCCGcGGcGCacuUGGcUCCgagccagcgGCGAGGCCGg -3'
miRNA:   3'- -GCCGGU-CCuCG---ACC-AGG---------CGCUCUGGC- -5'
10747 5' -62 NC_002794.1 + 115439 0.66 0.698334
Target:  5'- uGGUCAGGAgcaGCUGGUC---GAGAUCGg -3'
miRNA:   3'- gCCGGUCCU---CGACCAGgcgCUCUGGC- -5'
10747 5' -62 NC_002794.1 + 146699 0.67 0.688858
Target:  5'- aGGCCgacugcGGGAGCUGGUggccCUGCuGGAUCu -3'
miRNA:   3'- gCCGG------UCCUCGACCA----GGCGcUCUGGc -5'
10747 5' -62 NC_002794.1 + 184331 0.67 0.688858
Target:  5'- aCGGCCGGGgacAGCgacagGGUCCGC-AGcUCGc -3'
miRNA:   3'- -GCCGGUCC---UCGa----CCAGGCGcUCuGGC- -5'
10747 5' -62 NC_002794.1 + 140002 0.67 0.67934
Target:  5'- aCGGUgCGGGuGgaGG-CCGCGgAGGCCGc -3'
miRNA:   3'- -GCCG-GUCCuCgaCCaGGCGC-UCUGGC- -5'
10747 5' -62 NC_002794.1 + 34850 0.67 0.67934
Target:  5'- gGGCgucGGAGCgGGcgCCGCGGGcGCCGc -3'
miRNA:   3'- gCCGgu-CCUCGaCCa-GGCGCUC-UGGC- -5'
10747 5' -62 NC_002794.1 + 87050 0.67 0.67934
Target:  5'- gCGGCUcGGGGCcgGGUCCuguaGCGAcagcacggugcaGGCCGg -3'
miRNA:   3'- -GCCGGuCCUCGa-CCAGG----CGCU------------CUGGC- -5'
10747 5' -62 NC_002794.1 + 66629 0.67 0.67934
Target:  5'- gCGGUggCGGGAGgaGGUCCGUccgGGGGCa- -3'
miRNA:   3'- -GCCG--GUCCUCgaCCAGGCG---CUCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.