miRNA display CGI


Results 1 - 20 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 121904 0.65 0.897683
Target:  5'- -cUGCGUCGacuggacgucgcccGCCGCGGGGgAAGaGGCc -3'
miRNA:   3'- caGCGCAGC--------------CGGCGCUCUgUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 112506 0.66 0.893255
Target:  5'- -cCGCGagCGGUCGCGGugcuGGCGcAGGAGg -3'
miRNA:   3'- caGCGCa-GCCGGCGCU----CUGU-UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 40677 0.66 0.893255
Target:  5'- gGUCGuCGUCGucGUCGUcGGACGAGGuGUc -3'
miRNA:   3'- -CAGC-GCAGC--CGGCGcUCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 61880 0.66 0.893255
Target:  5'- -cCGuCGUCGgcGCCGCGcGGCGAGcgcggcGAGCg -3'
miRNA:   3'- caGC-GCAGC--CGGCGCuCUGUUC------CUCG- -5'
10748 3' -58.2 NC_002794.1 + 141649 0.66 0.893255
Target:  5'- --gGCGU-GGCCGCGGccgccGGCGGGucGAGCg -3'
miRNA:   3'- cagCGCAgCCGGCGCU-----CUGUUC--CUCG- -5'
10748 3' -58.2 NC_002794.1 + 79350 0.66 0.893255
Target:  5'- aUCGCGgcgcagagccugUCGGacaCGCuGGACGAGGcGCa -3'
miRNA:   3'- cAGCGC------------AGCCg--GCGcUCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 187802 0.66 0.893255
Target:  5'- -cCGCGaagCGaGCgaGCGAGugAGcGGAGCg -3'
miRNA:   3'- caGCGCa--GC-CGg-CGCUCugUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 187937 0.66 0.892614
Target:  5'- cGUCGCGUCacGCgugcgcgcgcgagCGCGGGACcucGGGAGg -3'
miRNA:   3'- -CAGCGCAGc-CG-------------GCGCUCUGu--UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 89518 0.66 0.891971
Target:  5'- -cCGCGUaGGCCagagucgGCgGAGGCAgcagacgcgacggAGGAGCg -3'
miRNA:   3'- caGCGCAgCCGG-------CG-CUCUGU-------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 33113 0.66 0.886749
Target:  5'- -aCGUGagCGGCCGCG-GGCAgacgauccaccAGGuGCu -3'
miRNA:   3'- caGCGCa-GCCGGCGCuCUGU-----------UCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 79277 0.66 0.886749
Target:  5'- -cCGgGUCGGCCGCGucuuuuccugcGugGccGAGCg -3'
miRNA:   3'- caGCgCAGCCGGCGCu----------CugUucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 91292 0.66 0.886749
Target:  5'- -aCGUGUCGG-CGCuGAG-CGAGGcGCu -3'
miRNA:   3'- caGCGCAGCCgGCG-CUCuGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 119152 0.66 0.886749
Target:  5'- gGUCGCGcagcaGGuCCGCGAaGGCcucGGGGAGg -3'
miRNA:   3'- -CAGCGCag---CC-GGCGCU-CUG---UUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 124380 0.66 0.882744
Target:  5'- uUCGCcUCGGUCGCGGcGGCGcgucgccggucgucGGGGCg -3'
miRNA:   3'- cAGCGcAGCCGGCGCU-CUGUu-------------CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 36911 0.66 0.880034
Target:  5'- gGUCGCGgcgcCGGCCcCGcGACcgcgGAGGAGa -3'
miRNA:   3'- -CAGCGCa---GCCGGcGCuCUG----UUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 3754 0.66 0.880034
Target:  5'- -gCGCGUCa-CgGCGGGGCGgGGGAGUg -3'
miRNA:   3'- caGCGCAGccGgCGCUCUGU-UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 185625 0.66 0.880034
Target:  5'- --aGCGaCGGCgaGCGAGACuc-GAGCg -3'
miRNA:   3'- cagCGCaGCCGg-CGCUCUGuucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 175705 0.66 0.880034
Target:  5'- --gGCGcCGGUcagauCGCcacAGGCGAGGAGCg -3'
miRNA:   3'- cagCGCaGCCG-----GCGc--UCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 150653 0.66 0.880034
Target:  5'- -gCGCGUCgaccugggcuGGcCCGCGA-ACGAGGuGCu -3'
miRNA:   3'- caGCGCAG----------CC-GGCGCUcUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 91062 0.66 0.880034
Target:  5'- -gCGCGUCGucauguacGCCGUGguGGGCuacgggcucAAGGAGCu -3'
miRNA:   3'- caGCGCAGC--------CGGCGC--UCUG---------UUCCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.