Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10748 | 3' | -58.2 | NC_002794.1 | + | 92260 | 0.72 | 0.544632 |
Target: 5'- cGUCGCuggCGGCgGCGccGGGCGAGGcGCg -3' miRNA: 3'- -CAGCGca-GCCGgCGC--UCUGUUCCuCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 113498 | 0.72 | 0.554259 |
Target: 5'- cUCGCGcgCGGCCGaGAGccGCGgaGGGAGCu -3' miRNA: 3'- cAGCGCa-GCCGGCgCUC--UGU--UCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 104880 | 0.72 | 0.573657 |
Target: 5'- -gCGCGUgaagcgggcCGGCCGCGAGGCGccGuGCu -3' miRNA: 3'- caGCGCA---------GCCGGCGCUCUGUucCuCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 142176 | 0.71 | 0.642434 |
Target: 5'- --aGCGUCGGCaGC---GCGAGGAGCg -3' miRNA: 3'- cagCGCAGCCGgCGcucUGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 108450 | 0.71 | 0.642434 |
Target: 5'- cUCGCGgcggCGGCCcgccggcaCGGGcCGAGGGGCg -3' miRNA: 3'- cAGCGCa---GCCGGc-------GCUCuGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 14677 | 0.71 | 0.603027 |
Target: 5'- cUCGCGgcggCGGUCGCGcugcuccuGACGgcgugGGGAGCg -3' miRNA: 3'- cAGCGCa---GCCGGCGCu-------CUGU-----UCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 110073 | 0.71 | 0.621732 |
Target: 5'- -gCGCGgaucgCGGUCGUGAGACGuuggguuAGGAGa -3' miRNA: 3'- caGCGCa----GCCGGCGCUCUGU-------UCCUCg -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 40409 | 0.71 | 0.622717 |
Target: 5'- gGUCGCGgggUCGGCCgGCGAcucuGCAgaucucgguaguGGGAGCg -3' miRNA: 3'- -CAGCGC---AGCCGG-CGCUc---UGU------------UCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 185471 | 0.71 | 0.593208 |
Target: 5'- -cCGCGggcggCGGCCGCG--GCGAGGGGa -3' miRNA: 3'- caGCGCa----GCCGGCGCucUGUUCCUCg -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 8760 | 0.71 | 0.622717 |
Target: 5'- uGUCGCGaCGG-CGUGaAGACGgcguGGGAGCu -3' miRNA: 3'- -CAGCGCaGCCgGCGC-UCUGU----UCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 58057 | 0.71 | 0.642434 |
Target: 5'- cGUCgGCGgccccggCGGCgGCGGGACGGGcGGCc -3' miRNA: 3'- -CAG-CGCa------GCCGgCGCUCUGUUCcUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 190351 | 0.71 | 0.593208 |
Target: 5'- cGUCagguCGUCGGCCGCGcGGCGcagcGGGuGCu -3' miRNA: 3'- -CAGc---GCAGCCGGCGCuCUGU----UCCuCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 184595 | 0.71 | 0.632576 |
Target: 5'- -aCGCG-CGGCCGCGGGaucgGCAAcGGccAGCg -3' miRNA: 3'- caGCGCaGCCGGCGCUC----UGUU-CC--UCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 156028 | 0.71 | 0.622717 |
Target: 5'- gGUCGCagccGUCGcGUCGCGcGACGGGG-GCa -3' miRNA: 3'- -CAGCG----CAGC-CGGCGCuCUGUUCCuCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 138767 | 0.71 | 0.612865 |
Target: 5'- aGUCGCGgCGGUCGgugGAGGgGAGGGGUc -3' miRNA: 3'- -CAGCGCaGCCGGCg--CUCUgUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 115967 | 0.71 | 0.603027 |
Target: 5'- -cCGUGgggGGgaGCGGGACGGGGAGCg -3' miRNA: 3'- caGCGCag-CCggCGCUCUGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 113925 | 0.7 | 0.681717 |
Target: 5'- ----gGUCGGCCGcCGAGGCGAcGGGCc -3' miRNA: 3'- cagcgCAGCCGGC-GCUCUGUUcCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 41840 | 0.7 | 0.649331 |
Target: 5'- gGUCGgGUCgaucagcagccccaGGCCGCcGGGCAGGGccgGGCg -3' miRNA: 3'- -CAGCgCAG--------------CCGGCGcUCUGUUCC---UCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 137563 | 0.7 | 0.698258 |
Target: 5'- cGUCGCGcCgccgucgccgccggGGCCG-GAGuGCGGGGAGCc -3' miRNA: 3'- -CAGCGCaG--------------CCGGCgCUC-UGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 179944 | 0.7 | 0.691463 |
Target: 5'- cGUCGCGggcCGGggaGCGAgcGACAgcAGGAGCg -3' miRNA: 3'- -CAGCGCa--GCCgg-CGCU--CUGU--UCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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