Results 41 - 60 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10748 | 3' | -58.2 | NC_002794.1 | + | 179944 | 0.7 | 0.691463 |
Target: 5'- cGUCGCGggcCGGggaGCGAgcGACAgcAGGAGCg -3' miRNA: 3'- -CAGCGCa--GCCgg-CGCU--CUGU--UCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 145604 | 0.7 | 0.662121 |
Target: 5'- -cCGCGgagUCGGgCGCGA--CGAGGAGCu -3' miRNA: 3'- caGCGC---AGCCgGCGCUcuGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 92947 | 0.7 | 0.670954 |
Target: 5'- -cCGCGUcaagaacCGGCCcaucccgcGCGGcGGCAAGGGGCu -3' miRNA: 3'- caGCGCA-------GCCGG--------CGCU-CUGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 113925 | 0.7 | 0.681717 |
Target: 5'- ----gGUCGGCCGcCGAGGCGAcGGGCc -3' miRNA: 3'- cagcgCAGCCGGC-GCUCUGUUcCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 118062 | 0.7 | 0.691463 |
Target: 5'- cUCGCGgaagaCGGCCGac-GACAucuGGAGCa -3' miRNA: 3'- cAGCGCa----GCCGGCgcuCUGUu--CCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 187468 | 0.7 | 0.671934 |
Target: 5'- cGUCGC-UCGGCgCGCGccgggccgaGGACGAGGccGCg -3' miRNA: 3'- -CAGCGcAGCCG-GCGC---------UCUGUUCCu-CG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 56310 | 0.7 | 0.681717 |
Target: 5'- gGUCGCGgucgcuggCGGCCGUGGccggcgacgcGGCGAaGAGCa -3' miRNA: 3'- -CAGCGCa-------GCCGGCGCU----------CUGUUcCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 149681 | 0.7 | 0.671934 |
Target: 5'- cGUCGCGcUCgacuGGCCGCGGGggccgccugGCGGGuGGGCc -3' miRNA: 3'- -CAGCGC-AG----CCGGCGCUC---------UGUUC-CUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 180946 | 0.69 | 0.720392 |
Target: 5'- cUCGCGUccgCGGCCGaCGcGGACuccgucGGGGCg -3' miRNA: 3'- cAGCGCA---GCCGGC-GC-UCUGuu----CCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 138721 | 0.69 | 0.748688 |
Target: 5'- cUCGCGUCGaGCCGgCucGACGGGGuccccGGCc -3' miRNA: 3'- cAGCGCAGC-CGGC-GcuCUGUUCC-----UCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 21449 | 0.69 | 0.720392 |
Target: 5'- cUCGCGUCGcucggcgucGCCGUGAcGGCAAcGGuGGCa -3' miRNA: 3'- cAGCGCAGC---------CGGCGCU-CUGUU-CC-UCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 36952 | 0.69 | 0.757021 |
Target: 5'- cGUCGCG-CGGCgGC-AGGCAgucgcgcAGGAGg -3' miRNA: 3'- -CAGCGCaGCCGgCGcUCUGU-------UCCUCg -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 140181 | 0.69 | 0.748688 |
Target: 5'- aUCGgGUCGGCgacgGCGucGuCGAGGGGCg -3' miRNA: 3'- cAGCgCAGCCGg---CGCu-CuGUUCCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 37781 | 0.69 | 0.757942 |
Target: 5'- cGUCGuCGUCGGCCGCaggcgccucgacGAGAC-GGucGCu -3' miRNA: 3'- -CAGC-GCAGCCGGCG------------CUCUGuUCcuCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 121046 | 0.69 | 0.757942 |
Target: 5'- -gCGCGUCGggcGCCGCGA-AgAAGGAcGCg -3' miRNA: 3'- caGCGCAGC---CGGCGCUcUgUUCCU-CG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 125461 | 0.69 | 0.748688 |
Target: 5'- --gGCGagcaCGGCCGCGAGaAUAAGuacGAGCa -3' miRNA: 3'- cagCGCa---GCCGGCGCUC-UGUUC---CUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 8677 | 0.69 | 0.73934 |
Target: 5'- uGUCGaucUCGGCCcCGuGGACGAuGGAGCa -3' miRNA: 3'- -CAGCgc-AGCCGGcGC-UCUGUU-CCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 32879 | 0.69 | 0.729905 |
Target: 5'- --gGCGgCGGCgGCGGcGGCAucauGGAGCg -3' miRNA: 3'- cagCGCaGCCGgCGCU-CUGUu---CCUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 49695 | 0.69 | 0.720392 |
Target: 5'- aGUCGCGUCGGCaCGaCGAcucgccccgGGCAGucGAGCc -3' miRNA: 3'- -CAGCGCAGCCG-GC-GCU---------CUGUUc-CUCG- -5' |
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10748 | 3' | -58.2 | NC_002794.1 | + | 140036 | 0.69 | 0.748688 |
Target: 5'- -cCGCGggCGGCgG-GAGACAcggaaAGGGGCu -3' miRNA: 3'- caGCGCa-GCCGgCgCUCUGU-----UCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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