miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 124506 1.1 0.002161
Target:  5'- aGUCGCGUCGGCCGCGAGACAAGGAGCc -3'
miRNA:   3'- -CAGCGCAGCCGGCGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 112351 0.83 0.142194
Target:  5'- --gGCGcCGGCgGCGGGGCGGGGAGCu -3'
miRNA:   3'- cagCGCaGCCGgCGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 99868 0.79 0.230607
Target:  5'- cGUCGUGUCGGCCGacuc-CAAGGAGCu -3'
miRNA:   3'- -CAGCGCAGCCGGCgcucuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 95759 0.79 0.253097
Target:  5'- cUCGCGgggcggCGGCCGCGAcGGCGGccGGGGCg -3'
miRNA:   3'- cAGCGCa-----GCCGGCGCU-CUGUU--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 44290 0.78 0.271124
Target:  5'- -cCGCGcCcgccgGGCCgGCGAGGCGGGGAGCg -3'
miRNA:   3'- caGCGCaG-----CCGG-CGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 156541 0.78 0.271124
Target:  5'- cGUCGCGUCGGCCGUG-GAUucGGcacGCg -3'
miRNA:   3'- -CAGCGCAGCCGGCGCuCUGuuCCu--CG- -5'
10748 3' -58.2 NC_002794.1 + 49855 0.78 0.271124
Target:  5'- -cCGCGUCGGCgGCGcccgccacccGGACGuGGAGCg -3'
miRNA:   3'- caGCGCAGCCGgCGC----------UCUGUuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 55140 0.78 0.29017
Target:  5'- uGUCGCGUCGGCacCGgGAGACAcgAGucGAGCg -3'
miRNA:   3'- -CAGCGCAGCCG--GCgCUCUGU--UC--CUCG- -5'
10748 3' -58.2 NC_002794.1 + 148123 0.76 0.376711
Target:  5'- gGUCgGUGUCGGgCGCGGGGCcgccGGGGCg -3'
miRNA:   3'- -CAG-CGCAGCCgGCGCUCUGuu--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 48608 0.75 0.392727
Target:  5'- cGUCgGCGUCGGCCuC-AGACGcGGAGCg -3'
miRNA:   3'- -CAG-CGCAGCCGGcGcUCUGUuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 94278 0.75 0.417565
Target:  5'- -gCGCGgcgCGGCC-CGAG-CGGGGGGCg -3'
miRNA:   3'- caGCGCa--GCCGGcGCUCuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 4176 0.75 0.426054
Target:  5'- cGUCGCgGUgGGUCGuCGAGGCAAGGcgauGCu -3'
miRNA:   3'- -CAGCG-CAgCCGGC-GCUCUGUUCCu---CG- -5'
10748 3' -58.2 NC_002794.1 + 53259 0.74 0.479041
Target:  5'- --gGCGUC-GCCGCGcGACAAcGGGGCg -3'
miRNA:   3'- cagCGCAGcCGGCGCuCUGUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 123672 0.73 0.50672
Target:  5'- uGUCGC-UCGGCC-CG-GGCuGGGAGCa -3'
miRNA:   3'- -CAGCGcAGCCGGcGCuCUGuUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 143491 0.73 0.515158
Target:  5'- uGUCGC--UGGCCGCGGGGCugcagauGAGGaAGCg -3'
miRNA:   3'- -CAGCGcaGCCGGCGCUCUG-------UUCC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 110437 0.73 0.535059
Target:  5'- uGUCGuCGUCGGUgGCgGAGGCcGGcGAGCc -3'
miRNA:   3'- -CAGC-GCAGCCGgCG-CUCUGuUC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 92260 0.72 0.544632
Target:  5'- cGUCGCuggCGGCgGCGccGGGCGAGGcGCg -3'
miRNA:   3'- -CAGCGca-GCCGgCGC--UCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 130018 0.72 0.554259
Target:  5'- -gCGgGUCGGCCuCGc-GCGAGGAGCg -3'
miRNA:   3'- caGCgCAGCCGGcGCucUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 113498 0.72 0.554259
Target:  5'- cUCGCGcgCGGCCGaGAGccGCGgaGGGAGCu -3'
miRNA:   3'- cAGCGCa-GCCGGCgCUC--UGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 104880 0.72 0.573657
Target:  5'- -gCGCGUgaagcgggcCGGCCGCGAGGCGccGuGCu -3'
miRNA:   3'- caGCGCA---------GCCGGCGCUCUGUucCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.