miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 44261 0.72 0.583416
Target:  5'- --gGCGgcUCGGCCGCcgGGGACGgAGGAGUn -3'
miRNA:   3'- cagCGC--AGCCGGCG--CUCUGU-UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 101862 0.72 0.583416
Target:  5'- -aCGCGcCGccuGCUGCucGACAAGGAGCa -3'
miRNA:   3'- caGCGCaGC---CGGCGcuCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 20385 0.72 0.583416
Target:  5'- cGUCGaCG-CGGUgcgGCGGGACcGGGAGCg -3'
miRNA:   3'- -CAGC-GCaGCCGg--CGCUCUGuUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 185471 0.71 0.593208
Target:  5'- -cCGCGggcggCGGCCGCG--GCGAGGGGa -3'
miRNA:   3'- caGCGCa----GCCGGCGCucUGUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 190351 0.71 0.593208
Target:  5'- cGUCagguCGUCGGCCGCGcGGCGcagcGGGuGCu -3'
miRNA:   3'- -CAGc---GCAGCCGGCGCuCUGU----UCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 14677 0.71 0.603027
Target:  5'- cUCGCGgcggCGGUCGCGcugcuccuGACGgcgugGGGAGCg -3'
miRNA:   3'- cAGCGCa---GCCGGCGCu-------CUGU-----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 115967 0.71 0.603027
Target:  5'- -cCGUGgggGGgaGCGGGACGGGGAGCg -3'
miRNA:   3'- caGCGCag-CCggCGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 138767 0.71 0.612865
Target:  5'- aGUCGCGgCGGUCGgugGAGGgGAGGGGUc -3'
miRNA:   3'- -CAGCGCaGCCGGCg--CUCUgUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 110073 0.71 0.621732
Target:  5'- -gCGCGgaucgCGGUCGUGAGACGuuggguuAGGAGa -3'
miRNA:   3'- caGCGCa----GCCGGCGCUCUGU-------UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 156028 0.71 0.622717
Target:  5'- gGUCGCagccGUCGcGUCGCGcGACGGGG-GCa -3'
miRNA:   3'- -CAGCG----CAGC-CGGCGCuCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 8760 0.71 0.622717
Target:  5'- uGUCGCGaCGG-CGUGaAGACGgcguGGGAGCu -3'
miRNA:   3'- -CAGCGCaGCCgGCGC-UCUGU----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 40409 0.71 0.622717
Target:  5'- gGUCGCGgggUCGGCCgGCGAcucuGCAgaucucgguaguGGGAGCg -3'
miRNA:   3'- -CAGCGC---AGCCGG-CGCUc---UGU------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 184595 0.71 0.632576
Target:  5'- -aCGCG-CGGCCGCGGGaucgGCAAcGGccAGCg -3'
miRNA:   3'- caGCGCaGCCGGCGCUC----UGUU-CC--UCG- -5'
10748 3' -58.2 NC_002794.1 + 58057 0.71 0.642434
Target:  5'- cGUCgGCGgccccggCGGCgGCGGGACGGGcGGCc -3'
miRNA:   3'- -CAG-CGCa------GCCGgCGCUCUGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 142176 0.71 0.642434
Target:  5'- --aGCGUCGGCaGC---GCGAGGAGCg -3'
miRNA:   3'- cagCGCAGCCGgCGcucUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 108450 0.71 0.642434
Target:  5'- cUCGCGgcggCGGCCcgccggcaCGGGcCGAGGGGCg -3'
miRNA:   3'- cAGCGCa---GCCGGc-------GCUCuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 41840 0.7 0.649331
Target:  5'- gGUCGgGUCgaucagcagccccaGGCCGCcGGGCAGGGccgGGCg -3'
miRNA:   3'- -CAGCgCAG--------------CCGGCGcUCUGUUCC---UCG- -5'
10748 3' -58.2 NC_002794.1 + 145604 0.7 0.662121
Target:  5'- -cCGCGgagUCGGgCGCGA--CGAGGAGCu -3'
miRNA:   3'- caGCGC---AGCCgGCGCUcuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 92947 0.7 0.670954
Target:  5'- -cCGCGUcaagaacCGGCCcaucccgcGCGGcGGCAAGGGGCu -3'
miRNA:   3'- caGCGCA-------GCCGG--------CGCU-CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 187468 0.7 0.671934
Target:  5'- cGUCGC-UCGGCgCGCGccgggccgaGGACGAGGccGCg -3'
miRNA:   3'- -CAGCGcAGCCG-GCGC---------UCUGUUCCu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.