miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 187468 0.7 0.671934
Target:  5'- cGUCGC-UCGGCgCGCGccgggccgaGGACGAGGccGCg -3'
miRNA:   3'- -CAGCGcAGCCG-GCGC---------UCUGUUCCu-CG- -5'
10748 3' -58.2 NC_002794.1 + 56310 0.7 0.681717
Target:  5'- gGUCGCGgucgcuggCGGCCGUGGccggcgacgcGGCGAaGAGCa -3'
miRNA:   3'- -CAGCGCa-------GCCGGCGCU----------CUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 113925 0.7 0.681717
Target:  5'- ----gGUCGGCCGcCGAGGCGAcGGGCc -3'
miRNA:   3'- cagcgCAGCCGGC-GCUCUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 18521 0.7 0.681717
Target:  5'- -cCGCGaacgCGGCCGCGAacGCGAGcacGAGCa -3'
miRNA:   3'- caGCGCa---GCCGGCGCUc-UGUUC---CUCG- -5'
10748 3' -58.2 NC_002794.1 + 179944 0.7 0.691463
Target:  5'- cGUCGCGggcCGGggaGCGAgcGACAgcAGGAGCg -3'
miRNA:   3'- -CAGCGCa--GCCgg-CGCU--CUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 184644 0.7 0.691463
Target:  5'- cGUCGCGUCGGCgGCGuaGCAAcGGcuGUa -3'
miRNA:   3'- -CAGCGCAGCCGgCGCucUGUU-CCu-CG- -5'
10748 3' -58.2 NC_002794.1 + 118062 0.7 0.691463
Target:  5'- cUCGCGgaagaCGGCCGac-GACAucuGGAGCa -3'
miRNA:   3'- cAGCGCa----GCCGGCgcuCUGUu--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 137563 0.7 0.698258
Target:  5'- cGUCGCGcCgccgucgccgccggGGCCG-GAGuGCGGGGAGCc -3'
miRNA:   3'- -CAGCGCaG--------------CCGGCgCUC-UGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 49695 0.69 0.720392
Target:  5'- aGUCGCGUCGGCaCGaCGAcucgccccgGGCAGucGAGCc -3'
miRNA:   3'- -CAGCGCAGCCG-GC-GCU---------CUGUUc-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 180946 0.69 0.720392
Target:  5'- cUCGCGUccgCGGCCGaCGcGGACuccgucGGGGCg -3'
miRNA:   3'- cAGCGCA---GCCGGC-GC-UCUGuu----CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 21449 0.69 0.720392
Target:  5'- cUCGCGUCGcucggcgucGCCGUGAcGGCAAcGGuGGCa -3'
miRNA:   3'- cAGCGCAGC---------CGGCGCU-CUGUU-CC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 32879 0.69 0.729905
Target:  5'- --gGCGgCGGCgGCGGcGGCAucauGGAGCg -3'
miRNA:   3'- cagCGCaGCCGgCGCU-CUGUu---CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 8677 0.69 0.73934
Target:  5'- uGUCGaucUCGGCCcCGuGGACGAuGGAGCa -3'
miRNA:   3'- -CAGCgc-AGCCGGcGC-UCUGUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 140036 0.69 0.748688
Target:  5'- -cCGCGggCGGCgG-GAGACAcggaaAGGGGCu -3'
miRNA:   3'- caGCGCa-GCCGgCgCUCUGU-----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 138721 0.69 0.748688
Target:  5'- cUCGCGUCGaGCCGgCucGACGGGGuccccGGCc -3'
miRNA:   3'- cAGCGCAGC-CGGC-GcuCUGUUCC-----UCG- -5'
10748 3' -58.2 NC_002794.1 + 125461 0.69 0.748688
Target:  5'- --gGCGagcaCGGCCGCGAGaAUAAGuacGAGCa -3'
miRNA:   3'- cagCGCa---GCCGGCGCUC-UGUUC---CUCG- -5'
10748 3' -58.2 NC_002794.1 + 140181 0.69 0.748688
Target:  5'- aUCGgGUCGGCgacgGCGucGuCGAGGGGCg -3'
miRNA:   3'- cAGCgCAGCCGg---CGCu-CuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 36952 0.69 0.757021
Target:  5'- cGUCGCG-CGGCgGC-AGGCAgucgcgcAGGAGg -3'
miRNA:   3'- -CAGCGCaGCCGgCGcUCUGU-------UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 141325 0.69 0.757942
Target:  5'- --gGCGUCGGCUcgguggcgaGCGAaGACGAG-AGCa -3'
miRNA:   3'- cagCGCAGCCGG---------CGCU-CUGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 121046 0.69 0.757942
Target:  5'- -gCGCGUCGggcGCCGCGA-AgAAGGAcGCg -3'
miRNA:   3'- caGCGCAGC---CGGCGCUcUgUUCCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.