miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 185625 0.66 0.880034
Target:  5'- --aGCGaCGGCgaGCGAGACuc-GAGCg -3'
miRNA:   3'- cagCGCaGCCGg-CGCUCUGuucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 175705 0.66 0.880034
Target:  5'- --gGCGcCGGUcagauCGCcacAGGCGAGGAGCg -3'
miRNA:   3'- cagCGCaGCCG-----GCGc--UCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 150653 0.66 0.880034
Target:  5'- -gCGCGUCgaccugggcuGGcCCGCGA-ACGAGGuGCu -3'
miRNA:   3'- caGCGCAG----------CC-GGCGCUcUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 32701 0.66 0.880034
Target:  5'- cGUCGCGggCGacucGCCGCcacccgucGGCGGGGAGUa -3'
miRNA:   3'- -CAGCGCa-GC----CGGCGcu------CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 38461 0.66 0.879351
Target:  5'- --gGCG-CGGCCGCGgcgcgcccuuuauGGGCgGAGGaAGCg -3'
miRNA:   3'- cagCGCaGCCGGCGC-------------UCUG-UUCC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 134670 0.66 0.878666
Target:  5'- gGUCGCugcaacgCGGCCGCGcuuGGCucgaccgccucuGGGGGCc -3'
miRNA:   3'- -CAGCGca-----GCCGGCGCu--CUGu-----------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 111760 0.66 0.873114
Target:  5'- -cCGCG-CGgcGCCGuCGGGGCGggcucguucgucAGGAGCg -3'
miRNA:   3'- caGCGCaGC--CGGC-GCUCUGU------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 70259 0.66 0.873114
Target:  5'- -aCGCGcagcgacggaGGCCGCGAaGGCcGGaGAGCa -3'
miRNA:   3'- caGCGCag--------CCGGCGCU-CUGuUC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 106274 0.66 0.873114
Target:  5'- -gCGCGUCGcGCCGCcucGGACGGcGAGa -3'
miRNA:   3'- caGCGCAGC-CGGCGc--UCUGUUcCUCg -5'
10748 3' -58.2 NC_002794.1 + 110269 0.66 0.868866
Target:  5'- cGUCGCGacggCGGCCGCcguccucgggcccgaGAGccGCGGGGAc- -3'
miRNA:   3'- -CAGCGCa---GCCGGCG---------------CUC--UGUUCCUcg -5'
10748 3' -58.2 NC_002794.1 + 55310 0.66 0.865994
Target:  5'- cGUCGCGgCGGgCGCGGGcggcuucCGAGGAc- -3'
miRNA:   3'- -CAGCGCaGCCgGCGCUCu------GUUCCUcg -5'
10748 3' -58.2 NC_002794.1 + 149286 0.66 0.865994
Target:  5'- -gCGCGgCGGCuCGCuc-ACGGGGGGCg -3'
miRNA:   3'- caGCGCaGCCG-GCGcucUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 117642 0.66 0.865994
Target:  5'- -cCGCG-CGGCCcCG-GACGAaGAGCg -3'
miRNA:   3'- caGCGCaGCCGGcGCuCUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 188352 0.66 0.865994
Target:  5'- cGUCGCGcccgucCGGCCgGCGGcGGcCGAGG-GCg -3'
miRNA:   3'- -CAGCGCa-----GCCGG-CGCU-CU-GUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 182230 0.66 0.865994
Target:  5'- -aCG-GUCaGGCCGCaGcAGGCcagGAGGAGCg -3'
miRNA:   3'- caGCgCAG-CCGGCG-C-UCUG---UUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 185337 0.66 0.86382
Target:  5'- -cCGCGUCGaccgcucgcgcgccGCCGCGAG-CGGGccgaacgccgcGAGCg -3'
miRNA:   3'- caGCGCAGC--------------CGGCGCUCuGUUC-----------CUCG- -5'
10748 3' -58.2 NC_002794.1 + 105826 0.67 0.858679
Target:  5'- -cCGgGUCGGUCgagcgaGCGGGAcCGAGGGGa -3'
miRNA:   3'- caGCgCAGCCGG------CGCUCU-GUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 53125 0.67 0.858679
Target:  5'- cUCGCGUCGaCCGCGGcgcucagcccGGCAuAGGccAGCg -3'
miRNA:   3'- cAGCGCAGCcGGCGCU----------CUGU-UCC--UCG- -5'
10748 3' -58.2 NC_002794.1 + 52928 0.67 0.858679
Target:  5'- cGUCGC-UCGGCCggcacGCGAG-CAAGcccAGCa -3'
miRNA:   3'- -CAGCGcAGCCGG-----CGCUCuGUUCc--UCG- -5'
10748 3' -58.2 NC_002794.1 + 32574 0.67 0.858679
Target:  5'- aGUCGCGcgCGGCgGUgccGGGGCc-GGGGCc -3'
miRNA:   3'- -CAGCGCa-GCCGgCG---CUCUGuuCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.