miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 113977 0.67 0.851173
Target:  5'- cUCGCGcCGcuccucgagcaGCCGUucGAGGCGccggAGGAGCg -3'
miRNA:   3'- cAGCGCaGC-----------CGGCG--CUCUGU----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 142359 0.67 0.851173
Target:  5'- --gGCGgcggaGGCgGCgGAGGCGgaGGGAGCg -3'
miRNA:   3'- cagCGCag---CCGgCG-CUCUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 146856 0.67 0.851173
Target:  5'- -gCGCGUCGuuCGCGuucGGGUggGGGGCg -3'
miRNA:   3'- caGCGCAGCcgGCGC---UCUGuuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 150405 0.67 0.851173
Target:  5'- gGUUGCGgcagaagccgUGGcCCGCGAGGCuggaccuGGAGUc -3'
miRNA:   3'- -CAGCGCa---------GCC-GGCGCUCUGuu-----CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 135630 0.67 0.851173
Target:  5'- gGUUGaCGUCGGCgaacaacagCGCGgagGGugGGGGGGUg -3'
miRNA:   3'- -CAGC-GCAGCCG---------GCGC---UCugUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 126415 0.67 0.851173
Target:  5'- gGUCGCGaUCuGGCUGCuGGuCGAGGuGUg -3'
miRNA:   3'- -CAGCGC-AG-CCGGCGcUCuGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 55278 0.67 0.843484
Target:  5'- --gGCGgCGGUgGCGGcGACGAGG-GCg -3'
miRNA:   3'- cagCGCaGCCGgCGCU-CUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 191861 0.67 0.843484
Target:  5'- gGUCGUGaaaGGCCgGCGGcGgAGGGGGCg -3'
miRNA:   3'- -CAGCGCag-CCGG-CGCUcUgUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 94048 0.67 0.835616
Target:  5'- --aGCGgCGGCggUGCGGGggcgGCGGGGGGCg -3'
miRNA:   3'- cagCGCaGCCG--GCGCUC----UGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 99464 0.67 0.835616
Target:  5'- --gGUaUCGGCgGCucaGAGACAcgGGGAGCg -3'
miRNA:   3'- cagCGcAGCCGgCG---CUCUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 142311 0.67 0.835616
Target:  5'- gGUgGCGgaggCGGCgGCGcAGGCGGcGGAGg -3'
miRNA:   3'- -CAgCGCa---GCCGgCGC-UCUGUU-CCUCg -5'
10748 3' -58.2 NC_002794.1 + 14616 0.67 0.835616
Target:  5'- -cCGCGacggGGCCG-GAGACGGGGccgGGCa -3'
miRNA:   3'- caGCGCag--CCGGCgCUCUGUUCC---UCG- -5'
10748 3' -58.2 NC_002794.1 + 116861 0.67 0.835616
Target:  5'- -aUGCGgCGGCCGUGucGCGcucgucagGGGGGCg -3'
miRNA:   3'- caGCGCaGCCGGCGCucUGU--------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 148077 0.67 0.835616
Target:  5'- -cCGgGagUGGCCuCGAG-CGAGGAGCa -3'
miRNA:   3'- caGCgCa-GCCGGcGCUCuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 14292 0.67 0.827577
Target:  5'- cGUCaGCGUCGaGgCGCGGGguaGCuuuuGGGGCg -3'
miRNA:   3'- -CAG-CGCAGC-CgGCGCUC---UGuu--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 189060 0.67 0.827577
Target:  5'- cGUCGCGUacggcgucucgGGCCGCcgguacAGACAcucgcuguucAGGAGCc -3'
miRNA:   3'- -CAGCGCAg----------CCGGCGc-----UCUGU----------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 34273 0.67 0.819372
Target:  5'- -gCGCGcaggCGGCCaGCGccagcGACcGGGAGCu -3'
miRNA:   3'- caGCGCa---GCCGG-CGCu----CUGuUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 113876 0.67 0.819372
Target:  5'- -gCGCGcUCGGCCGCGGcgcgcgucGGCGcGGucuGCa -3'
miRNA:   3'- caGCGC-AGCCGGCGCU--------CUGUuCCu--CG- -5'
10748 3' -58.2 NC_002794.1 + 128071 0.67 0.819372
Target:  5'- -cCGUGagGGCCGaauggcccgaguCGGcGACGGGGAGCu -3'
miRNA:   3'- caGCGCagCCGGC------------GCU-CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 86959 0.68 0.81101
Target:  5'- cGUCGaCGUCcGCUGCGGcgagcugcGACGAGGuccGGCg -3'
miRNA:   3'- -CAGC-GCAGcCGGCGCU--------CUGUUCC---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.