miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 86959 0.68 0.81101
Target:  5'- cGUCGaCGUCcGCUGCGGcgagcugcGACGAGGuccGGCg -3'
miRNA:   3'- -CAGC-GCAGcCGGCGCU--------CUGUUCC---UCG- -5'
10748 3' -58.2 NC_002794.1 + 59211 0.68 0.81101
Target:  5'- cGUCgGCGucUCGGCCGCGGcGCGc-GAGCu -3'
miRNA:   3'- -CAG-CGC--AGCCGGCGCUcUGUucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 65936 0.68 0.81101
Target:  5'- gGUgGCGUCGGCgGCGGuaucgucGCGAGcGGCg -3'
miRNA:   3'- -CAgCGCAGCCGgCGCUc------UGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 136500 0.68 0.81101
Target:  5'- uUCGCgGUUGGUCagcaGCGGGGCGAGGuAGa -3'
miRNA:   3'- cAGCG-CAGCCGG----CGCUCUGUUCC-UCg -5'
10748 3' -58.2 NC_002794.1 + 40509 0.68 0.808471
Target:  5'- cUCGaGUcaCGGCCGCcgacgcgccgacggGAGACGAGGGGg -3'
miRNA:   3'- cAGCgCA--GCCGGCG--------------CUCUGUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 96533 0.68 0.80592
Target:  5'- -gCGCcUCuGCCGCGccgacgaaccggucGACGAGGAGCg -3'
miRNA:   3'- caGCGcAGcCGGCGCu-------------CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 118323 0.68 0.802497
Target:  5'- cGUCGCGaCgGGCgGCGAGAa---GAGCa -3'
miRNA:   3'- -CAGCGCaG-CCGgCGCUCUguucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 142209 0.68 0.802497
Target:  5'- --aGCGgcggCGGCagcgGCGGuGCGGGGAGCg -3'
miRNA:   3'- cagCGCa---GCCGg---CGCUcUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 148640 0.68 0.793841
Target:  5'- aUCGCGgcggcgugcUCGGCuaCGCGccGAcCGAGGAGCg -3'
miRNA:   3'- cAGCGC---------AGCCG--GCGCu-CU-GUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 121461 0.68 0.793841
Target:  5'- cGUCGgGUCGaCCGuCGAGACGAccgccgguucGGAcGCg -3'
miRNA:   3'- -CAGCgCAGCcGGC-GCUCUGUU----------CCU-CG- -5'
10748 3' -58.2 NC_002794.1 + 128568 0.68 0.791217
Target:  5'- aUCGCGcUCGGCgucguguacacguuCGCGAcccugaGGCGgcAGGAGCg -3'
miRNA:   3'- cAGCGC-AGCCG--------------GCGCU------CUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 22590 0.68 0.785049
Target:  5'- aGUCGCGcUCGGCaCGguCGGGACGcucGAGCc -3'
miRNA:   3'- -CAGCGC-AGCCG-GC--GCUCUGUuc-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 125738 0.68 0.785049
Target:  5'- --gGCGgaggCgGGCCGCGGGACGGcGGccGGCg -3'
miRNA:   3'- cagCGCa---G-CCGGCGCUCUGUU-CC--UCG- -5'
10748 3' -58.2 NC_002794.1 + 129815 0.68 0.779713
Target:  5'- -cCGCGUCuGCCGCaucaucgcggaagucGAGGC--GGAGCg -3'
miRNA:   3'- caGCGCAGcCGGCG---------------CUCUGuuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 32313 0.68 0.77613
Target:  5'- -cCGCGcCGGCCGCggccgGAGACAAGcccuccGCg -3'
miRNA:   3'- caGCGCaGCCGGCG-----CUCUGUUCcu----CG- -5'
10748 3' -58.2 NC_002794.1 + 145875 0.68 0.77613
Target:  5'- -cCGCGacCGGaCCGCGAGAagcGGcGAGCg -3'
miRNA:   3'- caGCGCa-GCC-GGCGCUCUgu-UC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 101275 0.68 0.77613
Target:  5'- --gGCGcCGGUgGCGGcGGCGGGGAGg -3'
miRNA:   3'- cagCGCaGCCGgCGCU-CUGUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 135255 0.68 0.77613
Target:  5'- gGUCGUGuuaUCGuuCGCGAGACGAGcgcgcGAGCc -3'
miRNA:   3'- -CAGCGC---AGCcgGCGCUCUGUUC-----CUCG- -5'
10748 3' -58.2 NC_002794.1 + 154364 0.68 0.767092
Target:  5'- -gCGCGguccaGGCCGCGGcGGCGGcGGGCa -3'
miRNA:   3'- caGCGCag---CCGGCGCU-CUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 94485 0.68 0.767092
Target:  5'- --gGCGgacgCGGCCGCGGGccgugGCGGGGAu- -3'
miRNA:   3'- cagCGCa---GCCGGCGCUC-----UGUUCCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.