miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 3754 0.66 0.880034
Target:  5'- -gCGCGUCa-CgGCGGGGCGgGGGAGUg -3'
miRNA:   3'- caGCGCAGccGgCGCUCUGU-UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 4176 0.75 0.426054
Target:  5'- cGUCGCgGUgGGUCGuCGAGGCAAGGcgauGCu -3'
miRNA:   3'- -CAGCG-CAgCCGGC-GCUCUGUUCCu---CG- -5'
10748 3' -58.2 NC_002794.1 + 8677 0.69 0.73934
Target:  5'- uGUCGaucUCGGCCcCGuGGACGAuGGAGCa -3'
miRNA:   3'- -CAGCgc-AGCCGGcGC-UCUGUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 8760 0.71 0.622717
Target:  5'- uGUCGCGaCGG-CGUGaAGACGgcguGGGAGCu -3'
miRNA:   3'- -CAGCGCaGCCgGCGC-UCUGU----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 14292 0.67 0.827577
Target:  5'- cGUCaGCGUCGaGgCGCGGGguaGCuuuuGGGGCg -3'
miRNA:   3'- -CAG-CGCAGC-CgGCGCUC---UGuu--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 14616 0.67 0.835616
Target:  5'- -cCGCGacggGGCCG-GAGACGGGGccgGGCa -3'
miRNA:   3'- caGCGCag--CCGGCgCUCUGUUCC---UCG- -5'
10748 3' -58.2 NC_002794.1 + 14677 0.71 0.603027
Target:  5'- cUCGCGgcggCGGUCGCGcugcuccuGACGgcgugGGGAGCg -3'
miRNA:   3'- cAGCGCa---GCCGGCGCu-------CUGU-----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 18521 0.7 0.681717
Target:  5'- -cCGCGaacgCGGCCGCGAacGCGAGcacGAGCa -3'
miRNA:   3'- caGCGCa---GCCGGCGCUc-UGUUC---CUCG- -5'
10748 3' -58.2 NC_002794.1 + 20385 0.72 0.583416
Target:  5'- cGUCGaCG-CGGUgcgGCGGGACcGGGAGCg -3'
miRNA:   3'- -CAGC-GCaGCCGg--CGCUCUGuUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 21449 0.69 0.720392
Target:  5'- cUCGCGUCGcucggcgucGCCGUGAcGGCAAcGGuGGCa -3'
miRNA:   3'- cAGCGCAGC---------CGGCGCU-CUGUU-CC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 22590 0.68 0.785049
Target:  5'- aGUCGCGcUCGGCaCGguCGGGACGcucGAGCc -3'
miRNA:   3'- -CAGCGC-AGCCG-GC--GCUCUGUuc-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 32313 0.68 0.77613
Target:  5'- -cCGCGcCGGCCGCggccgGAGACAAGcccuccGCg -3'
miRNA:   3'- caGCGCaGCCGGCG-----CUCUGUUCcu----CG- -5'
10748 3' -58.2 NC_002794.1 + 32574 0.67 0.858679
Target:  5'- aGUCGCGcgCGGCgGUgccGGGGCc-GGGGCc -3'
miRNA:   3'- -CAGCGCa-GCCGgCG---CUCUGuuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 32701 0.66 0.880034
Target:  5'- cGUCGCGggCGacucGCCGCcacccgucGGCGGGGAGUa -3'
miRNA:   3'- -CAGCGCa-GC----CGGCGcu------CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 32879 0.69 0.729905
Target:  5'- --gGCGgCGGCgGCGGcGGCAucauGGAGCg -3'
miRNA:   3'- cagCGCaGCCGgCGCU-CUGUu---CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 33113 0.66 0.886749
Target:  5'- -aCGUGagCGGCCGCG-GGCAgacgauccaccAGGuGCu -3'
miRNA:   3'- caGCGCa-GCCGGCGCuCUGU-----------UCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 34273 0.67 0.819372
Target:  5'- -gCGCGcaggCGGCCaGCGccagcGACcGGGAGCu -3'
miRNA:   3'- caGCGCa---GCCGG-CGCu----CUGuUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 34731 0.66 0.880034
Target:  5'- -gCGCGggCGGCCGCaGAGcgcGCGAcGGcGCg -3'
miRNA:   3'- caGCGCa-GCCGGCG-CUC---UGUU-CCuCG- -5'
10748 3' -58.2 NC_002794.1 + 36911 0.66 0.880034
Target:  5'- gGUCGCGgcgcCGGCCcCGcGACcgcgGAGGAGa -3'
miRNA:   3'- -CAGCGCa---GCCGGcGCuCUG----UUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 36952 0.69 0.757021
Target:  5'- cGUCGCG-CGGCgGC-AGGCAgucgcgcAGGAGg -3'
miRNA:   3'- -CAGCGCaGCCGgCGcUCUGU-------UCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.