miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 37781 0.69 0.757942
Target:  5'- cGUCGuCGUCGGCCGCaggcgccucgacGAGAC-GGucGCu -3'
miRNA:   3'- -CAGC-GCAGCCGGCG------------CUCUGuUCcuCG- -5'
10748 3' -58.2 NC_002794.1 + 38461 0.66 0.879351
Target:  5'- --gGCG-CGGCCGCGgcgcgcccuuuauGGGCgGAGGaAGCg -3'
miRNA:   3'- cagCGCaGCCGGCGC-------------UCUG-UUCC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 38578 0.66 0.880034
Target:  5'- cUCGacggaGUCGGCCGCcuccucccGGACGAGaGGCc -3'
miRNA:   3'- cAGCg----CAGCCGGCGc-------UCUGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 40409 0.71 0.622717
Target:  5'- gGUCGCGgggUCGGCCgGCGAcucuGCAgaucucgguaguGGGAGCg -3'
miRNA:   3'- -CAGCGC---AGCCGG-CGCUc---UGU------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 40509 0.68 0.808471
Target:  5'- cUCGaGUcaCGGCCGCcgacgcgccgacggGAGACGAGGGGg -3'
miRNA:   3'- cAGCgCA--GCCGGCG--------------CUCUGUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 40677 0.66 0.893255
Target:  5'- gGUCGuCGUCGucGUCGUcGGACGAGGuGUc -3'
miRNA:   3'- -CAGC-GCAGC--CGGCGcUCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 41840 0.7 0.649331
Target:  5'- gGUCGgGUCgaucagcagccccaGGCCGCcGGGCAGGGccgGGCg -3'
miRNA:   3'- -CAGCgCAG--------------CCGGCGcUCUGUUCC---UCG- -5'
10748 3' -58.2 NC_002794.1 + 44261 0.72 0.583416
Target:  5'- --gGCGgcUCGGCCGCcgGGGACGgAGGAGUn -3'
miRNA:   3'- cagCGC--AGCCGGCG--CUCUGU-UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 44290 0.78 0.271124
Target:  5'- -cCGCGcCcgccgGGCCgGCGAGGCGGGGAGCg -3'
miRNA:   3'- caGCGCaG-----CCGG-CGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 48608 0.75 0.392727
Target:  5'- cGUCgGCGUCGGCCuC-AGACGcGGAGCg -3'
miRNA:   3'- -CAG-CGCAGCCGGcGcUCUGUuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 49695 0.69 0.720392
Target:  5'- aGUCGCGUCGGCaCGaCGAcucgccccgGGCAGucGAGCc -3'
miRNA:   3'- -CAGCGCAGCCG-GC-GCU---------CUGUUc-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 49855 0.78 0.271124
Target:  5'- -cCGCGUCGGCgGCGcccgccacccGGACGuGGAGCg -3'
miRNA:   3'- caGCGCAGCCGgCGC----------UCUGUuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 52928 0.67 0.858679
Target:  5'- cGUCGC-UCGGCCggcacGCGAG-CAAGcccAGCa -3'
miRNA:   3'- -CAGCGcAGCCGG-----CGCUCuGUUCc--UCG- -5'
10748 3' -58.2 NC_002794.1 + 53125 0.67 0.858679
Target:  5'- cUCGCGUCGaCCGCGGcgcucagcccGGCAuAGGccAGCg -3'
miRNA:   3'- cAGCGCAGCcGGCGCU----------CUGU-UCC--UCG- -5'
10748 3' -58.2 NC_002794.1 + 53259 0.74 0.479041
Target:  5'- --gGCGUC-GCCGCGcGACAAcGGGGCg -3'
miRNA:   3'- cagCGCAGcCGGCGCuCUGUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 55140 0.78 0.29017
Target:  5'- uGUCGCGUCGGCacCGgGAGACAcgAGucGAGCg -3'
miRNA:   3'- -CAGCGCAGCCG--GCgCUCUGU--UC--CUCG- -5'
10748 3' -58.2 NC_002794.1 + 55278 0.67 0.843484
Target:  5'- --gGCGgCGGUgGCGGcGACGAGG-GCg -3'
miRNA:   3'- cagCGCaGCCGgCGCU-CUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 55310 0.66 0.865994
Target:  5'- cGUCGCGgCGGgCGCGGGcggcuucCGAGGAc- -3'
miRNA:   3'- -CAGCGCaGCCgGCGCUCu------GUUCCUcg -5'
10748 3' -58.2 NC_002794.1 + 56310 0.7 0.681717
Target:  5'- gGUCGCGgucgcuggCGGCCGUGGccggcgacgcGGCGAaGAGCa -3'
miRNA:   3'- -CAGCGCa-------GCCGGCGCU----------CUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 58057 0.71 0.642434
Target:  5'- cGUCgGCGgccccggCGGCgGCGGGACGGGcGGCc -3'
miRNA:   3'- -CAG-CGCa------GCCGgCGCUCUGUUCcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.