miRNA display CGI


Results 41 - 60 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 59211 0.68 0.81101
Target:  5'- cGUCgGCGucUCGGCCGCGGcGCGc-GAGCu -3'
miRNA:   3'- -CAG-CGC--AGCCGGCGCUcUGUucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 61880 0.66 0.893255
Target:  5'- -cCGuCGUCGgcGCCGCGcGGCGAGcgcggcGAGCg -3'
miRNA:   3'- caGC-GCAGC--CGGCGCuCUGUUC------CUCG- -5'
10748 3' -58.2 NC_002794.1 + 65936 0.68 0.81101
Target:  5'- gGUgGCGUCGGCgGCGGuaucgucGCGAGcGGCg -3'
miRNA:   3'- -CAgCGCAGCCGgCGCUc------UGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 70259 0.66 0.873114
Target:  5'- -aCGCGcagcgacggaGGCCGCGAaGGCcGGaGAGCa -3'
miRNA:   3'- caGCGCag--------CCGGCGCU-CUGuUC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 79277 0.66 0.886749
Target:  5'- -cCGgGUCGGCCGCGucuuuuccugcGugGccGAGCg -3'
miRNA:   3'- caGCgCAGCCGGCGCu----------CugUucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 79350 0.66 0.893255
Target:  5'- aUCGCGgcgcagagccugUCGGacaCGCuGGACGAGGcGCa -3'
miRNA:   3'- cAGCGC------------AGCCg--GCGcUCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 86959 0.68 0.81101
Target:  5'- cGUCGaCGUCcGCUGCGGcgagcugcGACGAGGuccGGCg -3'
miRNA:   3'- -CAGC-GCAGcCGGCGCU--------CUGUUCC---UCG- -5'
10748 3' -58.2 NC_002794.1 + 89518 0.66 0.891971
Target:  5'- -cCGCGUaGGCCagagucgGCgGAGGCAgcagacgcgacggAGGAGCg -3'
miRNA:   3'- caGCGCAgCCGG-------CG-CUCUGU-------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 91062 0.66 0.880034
Target:  5'- -gCGCGUCGucauguacGCCGUGguGGGCuacgggcucAAGGAGCu -3'
miRNA:   3'- caGCGCAGC--------CGGCGC--UCUG---------UUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 91292 0.66 0.886749
Target:  5'- -aCGUGUCGG-CGCuGAG-CGAGGcGCu -3'
miRNA:   3'- caGCGCAGCCgGCG-CUCuGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 92260 0.72 0.544632
Target:  5'- cGUCGCuggCGGCgGCGccGGGCGAGGcGCg -3'
miRNA:   3'- -CAGCGca-GCCGgCGC--UCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 92947 0.7 0.670954
Target:  5'- -cCGCGUcaagaacCGGCCcaucccgcGCGGcGGCAAGGGGCu -3'
miRNA:   3'- caGCGCA-------GCCGG--------CGCU-CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 94048 0.67 0.835616
Target:  5'- --aGCGgCGGCggUGCGGGggcgGCGGGGGGCg -3'
miRNA:   3'- cagCGCaGCCG--GCGCUC----UGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 94278 0.75 0.417565
Target:  5'- -gCGCGgcgCGGCC-CGAG-CGGGGGGCg -3'
miRNA:   3'- caGCGCa--GCCGGcGCUCuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 94485 0.68 0.767092
Target:  5'- --gGCGgacgCGGCCGCGGGccgugGCGGGGAu- -3'
miRNA:   3'- cagCGCa---GCCGGCGCUC-----UGUUCCUcg -5'
10748 3' -58.2 NC_002794.1 + 95759 0.79 0.253097
Target:  5'- cUCGCGgggcggCGGCCGCGAcGGCGGccGGGGCg -3'
miRNA:   3'- cAGCGCa-----GCCGGCGCU-CUGUU--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 96533 0.68 0.80592
Target:  5'- -gCGCcUCuGCCGCGccgacgaaccggucGACGAGGAGCg -3'
miRNA:   3'- caGCGcAGcCGGCGCu-------------CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 99464 0.67 0.835616
Target:  5'- --gGUaUCGGCgGCucaGAGACAcgGGGAGCg -3'
miRNA:   3'- cagCGcAGCCGgCG---CUCUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 99868 0.79 0.230607
Target:  5'- cGUCGUGUCGGCCGacuc-CAAGGAGCu -3'
miRNA:   3'- -CAGCGCAGCCGGCgcucuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 101275 0.68 0.77613
Target:  5'- --gGCGcCGGUgGCGGcGGCGGGGAGg -3'
miRNA:   3'- cagCGCaGCCGgCGCU-CUGUUCCUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.