miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 101862 0.72 0.583416
Target:  5'- -aCGCGcCGccuGCUGCucGACAAGGAGCa -3'
miRNA:   3'- caGCGCaGC---CGGCGcuCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 104880 0.72 0.573657
Target:  5'- -gCGCGUgaagcgggcCGGCCGCGAGGCGccGuGCu -3'
miRNA:   3'- caGCGCA---------GCCGGCGCUCUGUucCuCG- -5'
10748 3' -58.2 NC_002794.1 + 105826 0.67 0.858679
Target:  5'- -cCGgGUCGGUCgagcgaGCGGGAcCGAGGGGa -3'
miRNA:   3'- caGCgCAGCCGG------CGCUCU-GUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 106274 0.66 0.873114
Target:  5'- -gCGCGUCGcGCCGCcucGGACGGcGAGa -3'
miRNA:   3'- caGCGCAGC-CGGCGc--UCUGUUcCUCg -5'
10748 3' -58.2 NC_002794.1 + 108450 0.71 0.642434
Target:  5'- cUCGCGgcggCGGCCcgccggcaCGGGcCGAGGGGCg -3'
miRNA:   3'- cAGCGCa---GCCGGc-------GCUCuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 110073 0.71 0.621732
Target:  5'- -gCGCGgaucgCGGUCGUGAGACGuuggguuAGGAGa -3'
miRNA:   3'- caGCGCa----GCCGGCGCUCUGU-------UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 110269 0.66 0.868866
Target:  5'- cGUCGCGacggCGGCCGCcguccucgggcccgaGAGccGCGGGGAc- -3'
miRNA:   3'- -CAGCGCa---GCCGGCG---------------CUC--UGUUCCUcg -5'
10748 3' -58.2 NC_002794.1 + 110437 0.73 0.535059
Target:  5'- uGUCGuCGUCGGUgGCgGAGGCcGGcGAGCc -3'
miRNA:   3'- -CAGC-GCAGCCGgCG-CUCUGuUC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 111760 0.66 0.873114
Target:  5'- -cCGCG-CGgcGCCGuCGGGGCGggcucguucgucAGGAGCg -3'
miRNA:   3'- caGCGCaGC--CGGC-GCUCUGU------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 112351 0.83 0.142194
Target:  5'- --gGCGcCGGCgGCGGGGCGGGGAGCu -3'
miRNA:   3'- cagCGCaGCCGgCGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 112506 0.66 0.893255
Target:  5'- -cCGCGagCGGUCGCGGugcuGGCGcAGGAGg -3'
miRNA:   3'- caGCGCa-GCCGGCGCU----CUGU-UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 113498 0.72 0.554259
Target:  5'- cUCGCGcgCGGCCGaGAGccGCGgaGGGAGCu -3'
miRNA:   3'- cAGCGCa-GCCGGCgCUC--UGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 113876 0.67 0.819372
Target:  5'- -gCGCGcUCGGCCGCGGcgcgcgucGGCGcGGucuGCa -3'
miRNA:   3'- caGCGC-AGCCGGCGCU--------CUGUuCCu--CG- -5'
10748 3' -58.2 NC_002794.1 + 113925 0.7 0.681717
Target:  5'- ----gGUCGGCCGcCGAGGCGAcGGGCc -3'
miRNA:   3'- cagcgCAGCCGGC-GCUCUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 113977 0.67 0.851173
Target:  5'- cUCGCGcCGcuccucgagcaGCCGUucGAGGCGccggAGGAGCg -3'
miRNA:   3'- cAGCGCaGC-----------CGGCG--CUCUGU----UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 115967 0.71 0.603027
Target:  5'- -cCGUGgggGGgaGCGGGACGGGGAGCg -3'
miRNA:   3'- caGCGCag-CCggCGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 116861 0.67 0.835616
Target:  5'- -aUGCGgCGGCCGUGucGCGcucgucagGGGGGCg -3'
miRNA:   3'- caGCGCaGCCGGCGCucUGU--------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 117642 0.66 0.865994
Target:  5'- -cCGCG-CGGCCcCG-GACGAaGAGCg -3'
miRNA:   3'- caGCGCaGCCGGcGCuCUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 118062 0.7 0.691463
Target:  5'- cUCGCGgaagaCGGCCGac-GACAucuGGAGCa -3'
miRNA:   3'- cAGCGCa----GCCGGCgcuCUGUu--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 118323 0.68 0.802497
Target:  5'- cGUCGCGaCgGGCgGCGAGAa---GAGCa -3'
miRNA:   3'- -CAGCGCaG-CCGgCGCUCUguucCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.