miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 191861 0.67 0.843484
Target:  5'- gGUCGUGaaaGGCCgGCGGcGgAGGGGGCg -3'
miRNA:   3'- -CAGCGCag-CCGG-CGCUcUgUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 190351 0.71 0.593208
Target:  5'- cGUCagguCGUCGGCCGCGcGGCGcagcGGGuGCu -3'
miRNA:   3'- -CAGc---GCAGCCGGCGCuCUGU----UCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 189060 0.67 0.827577
Target:  5'- cGUCGCGUacggcgucucgGGCCGCcgguacAGACAcucgcuguucAGGAGCc -3'
miRNA:   3'- -CAGCGCAg----------CCGGCGc-----UCUGU----------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 188352 0.66 0.865994
Target:  5'- cGUCGCGcccgucCGGCCgGCGGcGGcCGAGG-GCg -3'
miRNA:   3'- -CAGCGCa-----GCCGG-CGCU-CU-GUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 187937 0.66 0.892614
Target:  5'- cGUCGCGUCacGCgugcgcgcgcgagCGCGGGACcucGGGAGg -3'
miRNA:   3'- -CAGCGCAGc-CG-------------GCGCUCUGu--UCCUCg -5'
10748 3' -58.2 NC_002794.1 + 187802 0.66 0.893255
Target:  5'- -cCGCGaagCGaGCgaGCGAGugAGcGGAGCg -3'
miRNA:   3'- caGCGCa--GC-CGg-CGCUCugUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 187468 0.7 0.671934
Target:  5'- cGUCGC-UCGGCgCGCGccgggccgaGGACGAGGccGCg -3'
miRNA:   3'- -CAGCGcAGCCG-GCGC---------UCUGUUCCu-CG- -5'
10748 3' -58.2 NC_002794.1 + 185625 0.66 0.880034
Target:  5'- --aGCGaCGGCgaGCGAGACuc-GAGCg -3'
miRNA:   3'- cagCGCaGCCGg-CGCUCUGuucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 185471 0.71 0.593208
Target:  5'- -cCGCGggcggCGGCCGCG--GCGAGGGGa -3'
miRNA:   3'- caGCGCa----GCCGGCGCucUGUUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 185337 0.66 0.86382
Target:  5'- -cCGCGUCGaccgcucgcgcgccGCCGCGAG-CGGGccgaacgccgcGAGCg -3'
miRNA:   3'- caGCGCAGC--------------CGGCGCUCuGUUC-----------CUCG- -5'
10748 3' -58.2 NC_002794.1 + 184644 0.7 0.691463
Target:  5'- cGUCGCGUCGGCgGCGuaGCAAcGGcuGUa -3'
miRNA:   3'- -CAGCGCAGCCGgCGCucUGUU-CCu-CG- -5'
10748 3' -58.2 NC_002794.1 + 184595 0.71 0.632576
Target:  5'- -aCGCG-CGGCCGCGGGaucgGCAAcGGccAGCg -3'
miRNA:   3'- caGCGCaGCCGGCGCUC----UGUU-CC--UCG- -5'
10748 3' -58.2 NC_002794.1 + 182230 0.66 0.865994
Target:  5'- -aCG-GUCaGGCCGCaGcAGGCcagGAGGAGCg -3'
miRNA:   3'- caGCgCAG-CCGGCG-C-UCUG---UUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 180946 0.69 0.720392
Target:  5'- cUCGCGUccgCGGCCGaCGcGGACuccgucGGGGCg -3'
miRNA:   3'- cAGCGCA---GCCGGC-GC-UCUGuu----CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 179944 0.7 0.691463
Target:  5'- cGUCGCGggcCGGggaGCGAgcGACAgcAGGAGCg -3'
miRNA:   3'- -CAGCGCa--GCCgg-CGCU--CUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 178952 0.68 0.81101
Target:  5'- -cCGCcaCGGCCGCGAGGaAAGGuuucagguuaGGCg -3'
miRNA:   3'- caGCGcaGCCGGCGCUCUgUUCC----------UCG- -5'
10748 3' -58.2 NC_002794.1 + 175705 0.66 0.880034
Target:  5'- --gGCGcCGGUcagauCGCcacAGGCGAGGAGCg -3'
miRNA:   3'- cagCGCaGCCG-----GCGc--UCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 156541 0.78 0.271124
Target:  5'- cGUCGCGUCGGCCGUG-GAUucGGcacGCg -3'
miRNA:   3'- -CAGCGCAGCCGGCGCuCUGuuCCu--CG- -5'
10748 3' -58.2 NC_002794.1 + 156446 0.66 0.880034
Target:  5'- gGUCGCGccgaaggCGGUugguuagggggCGgGGGACGAcGGGGCg -3'
miRNA:   3'- -CAGCGCa------GCCG-----------GCgCUCUGUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 156028 0.71 0.622717
Target:  5'- gGUCGCagccGUCGcGUCGCGcGACGGGG-GCa -3'
miRNA:   3'- -CAGCG----CAGC-CGGCGCuCUGUUCCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.