miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 154364 0.68 0.767092
Target:  5'- -gCGCGguccaGGCCGCGGcGGCGGcGGGCa -3'
miRNA:   3'- caGCGCag---CCGGCGCU-CUGUUcCUCG- -5'
10748 3' -58.2 NC_002794.1 + 150653 0.66 0.880034
Target:  5'- -gCGCGUCgaccugggcuGGcCCGCGA-ACGAGGuGCu -3'
miRNA:   3'- caGCGCAG----------CC-GGCGCUcUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 150405 0.67 0.851173
Target:  5'- gGUUGCGgcagaagccgUGGcCCGCGAGGCuggaccuGGAGUc -3'
miRNA:   3'- -CAGCGCa---------GCC-GGCGCUCUGuu-----CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 149681 0.7 0.671934
Target:  5'- cGUCGCGcUCgacuGGCCGCGGGggccgccugGCGGGuGGGCc -3'
miRNA:   3'- -CAGCGC-AG----CCGGCGCUC---------UGUUC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 149286 0.66 0.865994
Target:  5'- -gCGCGgCGGCuCGCuc-ACGGGGGGCg -3'
miRNA:   3'- caGCGCaGCCG-GCGcucUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 148640 0.68 0.793841
Target:  5'- aUCGCGgcggcgugcUCGGCuaCGCGccGAcCGAGGAGCg -3'
miRNA:   3'- cAGCGC---------AGCCG--GCGCu-CU-GUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 148123 0.76 0.376711
Target:  5'- gGUCgGUGUCGGgCGCGGGGCcgccGGGGCg -3'
miRNA:   3'- -CAG-CGCAGCCgGCGCUCUGuu--CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 148077 0.67 0.835616
Target:  5'- -cCGgGagUGGCCuCGAG-CGAGGAGCa -3'
miRNA:   3'- caGCgCa-GCCGGcGCUCuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 146856 0.67 0.851173
Target:  5'- -gCGCGUCGuuCGCGuucGGGUggGGGGCg -3'
miRNA:   3'- caGCGCAGCcgGCGC---UCUGuuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 145875 0.68 0.77613
Target:  5'- -cCGCGacCGGaCCGCGAGAagcGGcGAGCg -3'
miRNA:   3'- caGCGCa-GCC-GGCGCUCUgu-UC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 145604 0.7 0.662121
Target:  5'- -cCGCGgagUCGGgCGCGA--CGAGGAGCu -3'
miRNA:   3'- caGCGC---AGCCgGCGCUcuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 143491 0.73 0.515158
Target:  5'- uGUCGC--UGGCCGCGGGGCugcagauGAGGaAGCg -3'
miRNA:   3'- -CAGCGcaGCCGGCGCUCUG-------UUCC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 142359 0.67 0.851173
Target:  5'- --gGCGgcggaGGCgGCgGAGGCGgaGGGAGCg -3'
miRNA:   3'- cagCGCag---CCGgCG-CUCUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 142311 0.67 0.835616
Target:  5'- gGUgGCGgaggCGGCgGCGcAGGCGGcGGAGg -3'
miRNA:   3'- -CAgCGCa---GCCGgCGC-UCUGUU-CCUCg -5'
10748 3' -58.2 NC_002794.1 + 142209 0.68 0.802497
Target:  5'- --aGCGgcggCGGCagcgGCGGuGCGGGGAGCg -3'
miRNA:   3'- cagCGCa---GCCGg---CGCUcUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 142176 0.71 0.642434
Target:  5'- --aGCGUCGGCaGC---GCGAGGAGCg -3'
miRNA:   3'- cagCGCAGCCGgCGcucUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 141649 0.66 0.893255
Target:  5'- --gGCGU-GGCCGCGGccgccGGCGGGucGAGCg -3'
miRNA:   3'- cagCGCAgCCGGCGCU-----CUGUUC--CUCG- -5'
10748 3' -58.2 NC_002794.1 + 141325 0.69 0.757942
Target:  5'- --gGCGUCGGCUcgguggcgaGCGAaGACGAG-AGCa -3'
miRNA:   3'- cagCGCAGCCGG---------CGCU-CUGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 140181 0.69 0.748688
Target:  5'- aUCGgGUCGGCgacgGCGucGuCGAGGGGCg -3'
miRNA:   3'- cAGCgCAGCCGg---CGCu-CuGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 140036 0.69 0.748688
Target:  5'- -cCGCGggCGGCgG-GAGACAcggaaAGGGGCu -3'
miRNA:   3'- caGCGCa-GCCGgCgCUCUGU-----UCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.