miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 138767 0.71 0.612865
Target:  5'- aGUCGCGgCGGUCGgugGAGGgGAGGGGUc -3'
miRNA:   3'- -CAGCGCaGCCGGCg--CUCUgUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 138721 0.69 0.748688
Target:  5'- cUCGCGUCGaGCCGgCucGACGGGGuccccGGCc -3'
miRNA:   3'- cAGCGCAGC-CGGC-GcuCUGUUCC-----UCG- -5'
10748 3' -58.2 NC_002794.1 + 137563 0.7 0.698258
Target:  5'- cGUCGCGcCgccgucgccgccggGGCCG-GAGuGCGGGGAGCc -3'
miRNA:   3'- -CAGCGCaG--------------CCGGCgCUC-UGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 136500 0.68 0.81101
Target:  5'- uUCGCgGUUGGUCagcaGCGGGGCGAGGuAGa -3'
miRNA:   3'- cAGCG-CAGCCGG----CGCUCUGUUCC-UCg -5'
10748 3' -58.2 NC_002794.1 + 135630 0.67 0.851173
Target:  5'- gGUUGaCGUCGGCgaacaacagCGCGgagGGugGGGGGGUg -3'
miRNA:   3'- -CAGC-GCAGCCG---------GCGC---UCugUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 135255 0.68 0.77613
Target:  5'- gGUCGUGuuaUCGuuCGCGAGACGAGcgcgcGAGCc -3'
miRNA:   3'- -CAGCGC---AGCcgGCGCUCUGUUC-----CUCG- -5'
10748 3' -58.2 NC_002794.1 + 134670 0.66 0.878666
Target:  5'- gGUCGCugcaacgCGGCCGCGcuuGGCucgaccgccucuGGGGGCc -3'
miRNA:   3'- -CAGCGca-----GCCGGCGCu--CUGu-----------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 130018 0.72 0.554259
Target:  5'- -gCGgGUCGGCCuCGc-GCGAGGAGCg -3'
miRNA:   3'- caGCgCAGCCGGcGCucUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 129815 0.68 0.779713
Target:  5'- -cCGCGUCuGCCGCaucaucgcggaagucGAGGC--GGAGCg -3'
miRNA:   3'- caGCGCAGcCGGCG---------------CUCUGuuCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 128568 0.68 0.791217
Target:  5'- aUCGCGcUCGGCgucguguacacguuCGCGAcccugaGGCGgcAGGAGCg -3'
miRNA:   3'- cAGCGC-AGCCG--------------GCGCU------CUGU--UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 128071 0.67 0.819372
Target:  5'- -cCGUGagGGCCGaauggcccgaguCGGcGACGGGGAGCu -3'
miRNA:   3'- caGCGCagCCGGC------------GCU-CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 126415 0.67 0.851173
Target:  5'- gGUCGCGaUCuGGCUGCuGGuCGAGGuGUg -3'
miRNA:   3'- -CAGCGC-AG-CCGGCGcUCuGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 125738 0.68 0.785049
Target:  5'- --gGCGgaggCgGGCCGCGGGACGGcGGccGGCg -3'
miRNA:   3'- cagCGCa---G-CCGGCGCUCUGUU-CC--UCG- -5'
10748 3' -58.2 NC_002794.1 + 125461 0.69 0.748688
Target:  5'- --gGCGagcaCGGCCGCGAGaAUAAGuacGAGCa -3'
miRNA:   3'- cagCGCa---GCCGGCGCUC-UGUUC---CUCG- -5'
10748 3' -58.2 NC_002794.1 + 124506 1.1 0.002161
Target:  5'- aGUCGCGUCGGCCGCGAGACAAGGAGCc -3'
miRNA:   3'- -CAGCGCAGCCGGCGCUCUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 124380 0.66 0.882744
Target:  5'- uUCGCcUCGGUCGCGGcGGCGcgucgccggucgucGGGGCg -3'
miRNA:   3'- cAGCGcAGCCGGCGCU-CUGUu-------------CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 123672 0.73 0.50672
Target:  5'- uGUCGC-UCGGCC-CG-GGCuGGGAGCa -3'
miRNA:   3'- -CAGCGcAGCCGGcGCuCUGuUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 121904 0.65 0.897683
Target:  5'- -cUGCGUCGacuggacgucgcccGCCGCGGGGgAAGaGGCc -3'
miRNA:   3'- caGCGCAGC--------------CGGCGCUCUgUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 121461 0.68 0.793841
Target:  5'- cGUCGgGUCGaCCGuCGAGACGAccgccgguucGGAcGCg -3'
miRNA:   3'- -CAGCgCAGCcGGC-GCUCUGUU----------CCU-CG- -5'
10748 3' -58.2 NC_002794.1 + 121046 0.69 0.757942
Target:  5'- -gCGCGUCGggcGCCGCGA-AgAAGGAcGCg -3'
miRNA:   3'- caGCGCAGC---CGGCGCUcUgUUCCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.