miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 3' -58.2 NC_002794.1 + 40677 0.66 0.893255
Target:  5'- gGUCGuCGUCGucGUCGUcGGACGAGGuGUc -3'
miRNA:   3'- -CAGC-GCAGC--CGGCGcUCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 61880 0.66 0.893255
Target:  5'- -cCGuCGUCGgcGCCGCGcGGCGAGcgcggcGAGCg -3'
miRNA:   3'- caGC-GCAGC--CGGCGCuCUGUUC------CUCG- -5'
10748 3' -58.2 NC_002794.1 + 141649 0.66 0.893255
Target:  5'- --gGCGU-GGCCGCGGccgccGGCGGGucGAGCg -3'
miRNA:   3'- cagCGCAgCCGGCGCU-----CUGUUC--CUCG- -5'
10748 3' -58.2 NC_002794.1 + 79350 0.66 0.893255
Target:  5'- aUCGCGgcgcagagccugUCGGacaCGCuGGACGAGGcGCa -3'
miRNA:   3'- cAGCGC------------AGCCg--GCGcUCUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 187802 0.66 0.893255
Target:  5'- -cCGCGaagCGaGCgaGCGAGugAGcGGAGCg -3'
miRNA:   3'- caGCGCa--GC-CGg-CGCUCugUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 32701 0.66 0.880034
Target:  5'- cGUCGCGggCGacucGCCGCcacccgucGGCGGGGAGUa -3'
miRNA:   3'- -CAGCGCa-GC----CGGCGcu------CUGUUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 150653 0.66 0.880034
Target:  5'- -gCGCGUCgaccugggcuGGcCCGCGA-ACGAGGuGCu -3'
miRNA:   3'- caGCGCAG----------CC-GGCGCUcUGUUCCuCG- -5'
10748 3' -58.2 NC_002794.1 + 106274 0.66 0.873114
Target:  5'- -gCGCGUCGcGCCGCcucGGACGGcGAGa -3'
miRNA:   3'- caGCGCAGC-CGGCGc--UCUGUUcCUCg -5'
10748 3' -58.2 NC_002794.1 + 70259 0.66 0.873114
Target:  5'- -aCGCGcagcgacggaGGCCGCGAaGGCcGGaGAGCa -3'
miRNA:   3'- caGCGCag--------CCGGCGCU-CUGuUC-CUCG- -5'
10748 3' -58.2 NC_002794.1 + 134670 0.66 0.878666
Target:  5'- gGUCGCugcaacgCGGCCGCGcuuGGCucgaccgccucuGGGGGCc -3'
miRNA:   3'- -CAGCGca-----GCCGGCGCu--CUGu-----------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 38461 0.66 0.879351
Target:  5'- --gGCG-CGGCCGCGgcgcgcccuuuauGGGCgGAGGaAGCg -3'
miRNA:   3'- cagCGCaGCCGGCGC-------------UCUG-UUCC-UCG- -5'
10748 3' -58.2 NC_002794.1 + 34731 0.66 0.880034
Target:  5'- -gCGCGggCGGCCGCaGAGcgcGCGAcGGcGCg -3'
miRNA:   3'- caGCGCa-GCCGGCG-CUC---UGUU-CCuCG- -5'
10748 3' -58.2 NC_002794.1 + 111760 0.66 0.873114
Target:  5'- -cCGCG-CGgcGCCGuCGGGGCGggcucguucgucAGGAGCg -3'
miRNA:   3'- caGCGCaGC--CGGC-GCUCUGU------------UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 156446 0.66 0.880034
Target:  5'- gGUCGCGccgaaggCGGUugguuagggggCGgGGGACGAcGGGGCg -3'
miRNA:   3'- -CAGCGCa------GCCG-----------GCgCUCUGUU-CCUCG- -5'
10748 3' -58.2 NC_002794.1 + 38578 0.66 0.880034
Target:  5'- cUCGacggaGUCGGCCGCcuccucccGGACGAGaGGCc -3'
miRNA:   3'- cAGCg----CAGCCGGCGc-------UCUGUUCcUCG- -5'
10748 3' -58.2 NC_002794.1 + 91062 0.66 0.880034
Target:  5'- -gCGCGUCGucauguacGCCGUGguGGGCuacgggcucAAGGAGCu -3'
miRNA:   3'- caGCGCAGC--------CGGCGC--UCUG---------UUCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 36911 0.66 0.880034
Target:  5'- gGUCGCGgcgcCGGCCcCGcGACcgcgGAGGAGa -3'
miRNA:   3'- -CAGCGCa---GCCGGcGCuCUG----UUCCUCg -5'
10748 3' -58.2 NC_002794.1 + 3754 0.66 0.880034
Target:  5'- -gCGCGUCa-CgGCGGGGCGgGGGAGUg -3'
miRNA:   3'- caGCGCAGccGgCGCUCUGU-UCCUCG- -5'
10748 3' -58.2 NC_002794.1 + 185625 0.66 0.880034
Target:  5'- --aGCGaCGGCgaGCGAGACuc-GAGCg -3'
miRNA:   3'- cagCGCaGCCGg-CGCUCUGuucCUCG- -5'
10748 3' -58.2 NC_002794.1 + 175705 0.66 0.880034
Target:  5'- --gGCGcCGGUcagauCGCcacAGGCGAGGAGCg -3'
miRNA:   3'- cagCGCaGCCG-----GCGc--UCUGUUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.