miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 5' -58.1 NC_002794.1 + 120054 0.66 0.852743
Target:  5'- -cGGCGgUgGCGGCcgcgGAGGCCG-ACGc -3'
miRNA:   3'- gaCCGCgA-CGCCGa---CUUCGGCaUGUu -5'
10748 5' -58.1 NC_002794.1 + 58661 0.66 0.844876
Target:  5'- -gGGCuGCUGCaGCc--GGCCGUGCAc -3'
miRNA:   3'- gaCCG-CGACGcCGacuUCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 103775 0.66 0.844876
Target:  5'- aUGGCGUgcaucuccgGCGGCUG-AGCUugagGUGCGc -3'
miRNA:   3'- gACCGCGa--------CGCCGACuUCGG----CAUGUu -5'
10748 5' -58.1 NC_002794.1 + 189635 0.66 0.836819
Target:  5'- aCUGGCuaGCUGgcUGGCUGAcuAGCCGgcugGCc- -3'
miRNA:   3'- -GACCG--CGAC--GCCGACU--UCGGCa---UGuu -5'
10748 5' -58.1 NC_002794.1 + 142325 0.66 0.836819
Target:  5'- -cGGCGCagGCGGCgGAGGCgGcggagGCGg -3'
miRNA:   3'- gaCCGCGa-CGCCGaCUUCGgCa----UGUu -5'
10748 5' -58.1 NC_002794.1 + 94005 0.66 0.836819
Target:  5'- -cGGCGCcgGCGGCg--GGCCG-GCGGg -3'
miRNA:   3'- gaCCGCGa-CGCCGacuUCGGCaUGUU- -5'
10748 5' -58.1 NC_002794.1 + 37762 0.66 0.811583
Target:  5'- -cGGCGCcgGCGGgaGcGGCCGUcgucgucggccGCAGg -3'
miRNA:   3'- gaCCGCGa-CGCCgaCuUCGGCA-----------UGUU- -5'
10748 5' -58.1 NC_002794.1 + 99931 0.67 0.784911
Target:  5'- -cGGCGUggucuUGCGGCUGuucGGCCGgACc- -3'
miRNA:   3'- gaCCGCG-----ACGCCGACu--UCGGCaUGuu -5'
10748 5' -58.1 NC_002794.1 + 66872 0.67 0.784911
Target:  5'- -cGGCG-UGCGGCUGAgccaucgcGGCCG-ACu- -3'
miRNA:   3'- gaCCGCgACGCCGACU--------UCGGCaUGuu -5'
10748 5' -58.1 NC_002794.1 + 115926 0.67 0.77574
Target:  5'- uUGGCGCgGCGGCg--GGCCGg---- -3'
miRNA:   3'- gACCGCGaCGCCGacuUCGGCauguu -5'
10748 5' -58.1 NC_002794.1 + 120908 0.67 0.766443
Target:  5'- -gGGUGCUGaCGcGCa-AAGCCGUGCAGc -3'
miRNA:   3'- gaCCGCGAC-GC-CGacUUCGGCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 126279 0.67 0.766443
Target:  5'- -cGGCGCUG-GGCUu--GCUGUGCGc -3'
miRNA:   3'- gaCCGCGACgCCGAcuuCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 11981 0.67 0.757029
Target:  5'- aUGGCGUccgGCGGCUGGuugcuGCUGUGu-- -3'
miRNA:   3'- gACCGCGa--CGCCGACUu----CGGCAUguu -5'
10748 5' -58.1 NC_002794.1 + 123480 0.68 0.71838
Target:  5'- -aGGCGCUGCGGaccagcgUGGAcCUGUGCAu -3'
miRNA:   3'- gaCCGCGACGCCg------ACUUcGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 106431 0.68 0.71838
Target:  5'- aUGGCGCUGuuGgaGAAGgCgGUGCAGg -3'
miRNA:   3'- gACCGCGACgcCgaCUUC-GgCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 192151 0.68 0.71838
Target:  5'- -cGGCGCggucGCGGC-GGAGCC-UGCGGu -3'
miRNA:   3'- gaCCGCGa---CGCCGaCUUCGGcAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 99701 0.68 0.714442
Target:  5'- gCUGGCGCcGCGGaUGuucuuucgcgaccGGCCGUACGu -3'
miRNA:   3'- -GACCGCGaCGCCgACu------------UCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 139004 0.68 0.708515
Target:  5'- -aGGCuuUGCGGCUGAAgagcucGCCGcgGCGAa -3'
miRNA:   3'- gaCCGcgACGCCGACUU------CGGCa-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 125842 0.68 0.707525
Target:  5'- gCUGcuGCGCUGcCGGCUGGacaagcgGGCCGUGu-- -3'
miRNA:   3'- -GAC--CGCGAC-GCCGACU-------UCGGCAUguu -5'
10748 5' -58.1 NC_002794.1 + 44170 0.68 0.705542
Target:  5'- -cGGCGCgagcgGCGGCUcgucgacuccgggcGAAGCCGggccgACGu -3'
miRNA:   3'- gaCCGCGa----CGCCGA--------------CUUCGGCa----UGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.