miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 5' -58.1 NC_002794.1 + 124540 1.06 0.003035
Target:  5'- gCUGGCGCUGCGGCUGAAGCCGUACAAg -3'
miRNA:   3'- -GACCGCGACGCCGACUUCGGCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 94829 0.8 0.181363
Target:  5'- -gGGUGCUGCGGCUGGAccGCUGUGCc- -3'
miRNA:   3'- gaCCGCGACGCCGACUU--CGGCAUGuu -5'
10748 5' -58.1 NC_002794.1 + 101811 0.74 0.408336
Target:  5'- uUGGCGCaGCGGCgc--GCCGUGCGc -3'
miRNA:   3'- gACCGCGaCGCCGacuuCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 103446 0.73 0.443424
Target:  5'- aCUGGaagaGCUGCGGCUGGuugauggacAGCCGcaGCAGg -3'
miRNA:   3'- -GACCg---CGACGCCGACU---------UCGGCa-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 150396 0.73 0.443424
Target:  5'- -gGGCGCccugguUGCGGCaGAAGCCGUggcccGCGAg -3'
miRNA:   3'- gaCCGCG------ACGCCGaCUUCGGCA-----UGUU- -5'
10748 5' -58.1 NC_002794.1 + 21717 0.71 0.576551
Target:  5'- -gGGCGCUGCgucgcgaucgcgaGGCcGAAGCgGUGCGc -3'
miRNA:   3'- gaCCGCGACG-------------CCGaCUUCGgCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 92315 0.7 0.597677
Target:  5'- -gGGCGCggGCGGCgGggGCCcggGCGGg -3'
miRNA:   3'- gaCCGCGa-CGCCGaCuuCGGca-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 50579 0.7 0.628031
Target:  5'- -cGGCGUgcgcgGCGGCUGGguGGCCG-GCGc -3'
miRNA:   3'- gaCCGCGa----CGCCGACU--UCGGCaUGUu -5'
10748 5' -58.1 NC_002794.1 + 68472 0.7 0.642217
Target:  5'- -cGGCGCaguggggcacggagGCGGCcGAgccGGCCGUGCGGg -3'
miRNA:   3'- gaCCGCGa-------------CGCCGaCU---UCGGCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 98934 0.69 0.648293
Target:  5'- -gGGCGCgGCcgggaaggGGCUGggGCuCGUGCu- -3'
miRNA:   3'- gaCCGCGaCG--------CCGACuuCG-GCAUGuu -5'
10748 5' -58.1 NC_002794.1 + 106040 0.69 0.695596
Target:  5'- gCUGGaCGC-GCGGCUGAacuucgucaacgugGGCCGccgGCAc -3'
miRNA:   3'- -GACC-GCGaCGCCGACU--------------UCGGCa--UGUu -5'
10748 5' -58.1 NC_002794.1 + 44170 0.68 0.705542
Target:  5'- -cGGCGCgagcgGCGGCUcgucgacuccgggcGAAGCCGggccgACGu -3'
miRNA:   3'- gaCCGCGa----CGCCGA--------------CUUCGGCa----UGUu -5'
10748 5' -58.1 NC_002794.1 + 125842 0.68 0.707525
Target:  5'- gCUGcuGCGCUGcCGGCUGGacaagcgGGCCGUGu-- -3'
miRNA:   3'- -GAC--CGCGAC-GCCGACU-------UCGGCAUguu -5'
10748 5' -58.1 NC_002794.1 + 139004 0.68 0.708515
Target:  5'- -aGGCuuUGCGGCUGAAgagcucGCCGcgGCGAa -3'
miRNA:   3'- gaCCGcgACGCCGACUU------CGGCa-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 99701 0.68 0.714442
Target:  5'- gCUGGCGCcGCGGaUGuucuuucgcgaccGGCCGUACGu -3'
miRNA:   3'- -GACCGCGaCGCCgACu------------UCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 123480 0.68 0.71838
Target:  5'- -aGGCGCUGCGGaccagcgUGGAcCUGUGCAu -3'
miRNA:   3'- gaCCGCGACGCCg------ACUUcGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 192151 0.68 0.71838
Target:  5'- -cGGCGCggucGCGGC-GGAGCC-UGCGGu -3'
miRNA:   3'- gaCCGCGa---CGCCGaCUUCGGcAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 106431 0.68 0.71838
Target:  5'- aUGGCGCUGuuGgaGAAGgCgGUGCAGg -3'
miRNA:   3'- gACCGCGACgcCgaCUUC-GgCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 11981 0.67 0.757029
Target:  5'- aUGGCGUccgGCGGCUGGuugcuGCUGUGu-- -3'
miRNA:   3'- gACCGCGa--CGCCGACUu----CGGCAUguu -5'
10748 5' -58.1 NC_002794.1 + 126279 0.67 0.766443
Target:  5'- -cGGCGCUG-GGCUu--GCUGUGCGc -3'
miRNA:   3'- gaCCGCGACgCCGAcuuCGGCAUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.