miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 5' -58.1 NC_002794.1 + 11981 0.67 0.757029
Target:  5'- aUGGCGUccgGCGGCUGGuugcuGCUGUGu-- -3'
miRNA:   3'- gACCGCGa--CGCCGACUu----CGGCAUguu -5'
10748 5' -58.1 NC_002794.1 + 21717 0.71 0.576551
Target:  5'- -gGGCGCUGCgucgcgaucgcgaGGCcGAAGCgGUGCGc -3'
miRNA:   3'- gaCCGCGACG-------------CCGaCUUCGgCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 37762 0.66 0.811583
Target:  5'- -cGGCGCcgGCGGgaGcGGCCGUcgucgucggccGCAGg -3'
miRNA:   3'- gaCCGCGa-CGCCgaCuUCGGCA-----------UGUU- -5'
10748 5' -58.1 NC_002794.1 + 44170 0.68 0.705542
Target:  5'- -cGGCGCgagcgGCGGCUcgucgacuccgggcGAAGCCGggccgACGu -3'
miRNA:   3'- gaCCGCGa----CGCCGA--------------CUUCGGCa----UGUu -5'
10748 5' -58.1 NC_002794.1 + 50579 0.7 0.628031
Target:  5'- -cGGCGUgcgcgGCGGCUGGguGGCCG-GCGc -3'
miRNA:   3'- gaCCGCGa----CGCCGACU--UCGGCaUGUu -5'
10748 5' -58.1 NC_002794.1 + 58661 0.66 0.844876
Target:  5'- -gGGCuGCUGCaGCc--GGCCGUGCAc -3'
miRNA:   3'- gaCCG-CGACGcCGacuUCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 66872 0.67 0.784911
Target:  5'- -cGGCG-UGCGGCUGAgccaucgcGGCCG-ACu- -3'
miRNA:   3'- gaCCGCgACGCCGACU--------UCGGCaUGuu -5'
10748 5' -58.1 NC_002794.1 + 68472 0.7 0.642217
Target:  5'- -cGGCGCaguggggcacggagGCGGCcGAgccGGCCGUGCGGg -3'
miRNA:   3'- gaCCGCGa-------------CGCCGaCU---UCGGCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 92315 0.7 0.597677
Target:  5'- -gGGCGCggGCGGCgGggGCCcggGCGGg -3'
miRNA:   3'- gaCCGCGa-CGCCGaCuuCGGca-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 94005 0.66 0.836819
Target:  5'- -cGGCGCcgGCGGCg--GGCCG-GCGGg -3'
miRNA:   3'- gaCCGCGa-CGCCGacuUCGGCaUGUU- -5'
10748 5' -58.1 NC_002794.1 + 94829 0.8 0.181363
Target:  5'- -gGGUGCUGCGGCUGGAccGCUGUGCc- -3'
miRNA:   3'- gaCCGCGACGCCGACUU--CGGCAUGuu -5'
10748 5' -58.1 NC_002794.1 + 98934 0.69 0.648293
Target:  5'- -gGGCGCgGCcgggaaggGGCUGggGCuCGUGCu- -3'
miRNA:   3'- gaCCGCGaCG--------CCGACuuCG-GCAUGuu -5'
10748 5' -58.1 NC_002794.1 + 99701 0.68 0.714442
Target:  5'- gCUGGCGCcGCGGaUGuucuuucgcgaccGGCCGUACGu -3'
miRNA:   3'- -GACCGCGaCGCCgACu------------UCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 99931 0.67 0.784911
Target:  5'- -cGGCGUggucuUGCGGCUGuucGGCCGgACc- -3'
miRNA:   3'- gaCCGCG-----ACGCCGACu--UCGGCaUGuu -5'
10748 5' -58.1 NC_002794.1 + 101811 0.74 0.408336
Target:  5'- uUGGCGCaGCGGCgc--GCCGUGCGc -3'
miRNA:   3'- gACCGCGaCGCCGacuuCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 103446 0.73 0.443424
Target:  5'- aCUGGaagaGCUGCGGCUGGuugauggacAGCCGcaGCAGg -3'
miRNA:   3'- -GACCg---CGACGCCGACU---------UCGGCa-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 103775 0.66 0.844876
Target:  5'- aUGGCGUgcaucuccgGCGGCUG-AGCUugagGUGCGc -3'
miRNA:   3'- gACCGCGa--------CGCCGACuUCGG----CAUGUu -5'
10748 5' -58.1 NC_002794.1 + 106040 0.69 0.695596
Target:  5'- gCUGGaCGC-GCGGCUGAacuucgucaacgugGGCCGccgGCAc -3'
miRNA:   3'- -GACC-GCGaCGCCGACU--------------UCGGCa--UGUu -5'
10748 5' -58.1 NC_002794.1 + 106431 0.68 0.71838
Target:  5'- aUGGCGCUGuuGgaGAAGgCgGUGCAGg -3'
miRNA:   3'- gACCGCGACgcCgaCUUC-GgCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 115926 0.67 0.77574
Target:  5'- uUGGCGCgGCGGCg--GGCCGg---- -3'
miRNA:   3'- gACCGCGaCGCCGacuUCGGCauguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.