miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10748 5' -58.1 NC_002794.1 + 120054 0.66 0.852743
Target:  5'- -cGGCGgUgGCGGCcgcgGAGGCCG-ACGc -3'
miRNA:   3'- gaCCGCgA-CGCCGa---CUUCGGCaUGUu -5'
10748 5' -58.1 NC_002794.1 + 120908 0.67 0.766443
Target:  5'- -gGGUGCUGaCGcGCa-AAGCCGUGCAGc -3'
miRNA:   3'- gaCCGCGAC-GC-CGacUUCGGCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 123480 0.68 0.71838
Target:  5'- -aGGCGCUGCGGaccagcgUGGAcCUGUGCAu -3'
miRNA:   3'- gaCCGCGACGCCg------ACUUcGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 124540 1.06 0.003035
Target:  5'- gCUGGCGCUGCGGCUGAAGCCGUACAAg -3'
miRNA:   3'- -GACCGCGACGCCGACUUCGGCAUGUU- -5'
10748 5' -58.1 NC_002794.1 + 125842 0.68 0.707525
Target:  5'- gCUGcuGCGCUGcCGGCUGGacaagcgGGCCGUGu-- -3'
miRNA:   3'- -GAC--CGCGAC-GCCGACU-------UCGGCAUguu -5'
10748 5' -58.1 NC_002794.1 + 126279 0.67 0.766443
Target:  5'- -cGGCGCUG-GGCUu--GCUGUGCGc -3'
miRNA:   3'- gaCCGCGACgCCGAcuuCGGCAUGUu -5'
10748 5' -58.1 NC_002794.1 + 139004 0.68 0.708515
Target:  5'- -aGGCuuUGCGGCUGAAgagcucGCCGcgGCGAa -3'
miRNA:   3'- gaCCGcgACGCCGACUU------CGGCa-UGUU- -5'
10748 5' -58.1 NC_002794.1 + 142325 0.66 0.836819
Target:  5'- -cGGCGCagGCGGCgGAGGCgGcggagGCGg -3'
miRNA:   3'- gaCCGCGa-CGCCGaCUUCGgCa----UGUu -5'
10748 5' -58.1 NC_002794.1 + 150396 0.73 0.443424
Target:  5'- -gGGCGCccugguUGCGGCaGAAGCCGUggcccGCGAg -3'
miRNA:   3'- gaCCGCG------ACGCCGaCUUCGGCA-----UGUU- -5'
10748 5' -58.1 NC_002794.1 + 189635 0.66 0.836819
Target:  5'- aCUGGCuaGCUGgcUGGCUGAcuAGCCGgcugGCc- -3'
miRNA:   3'- -GACCG--CGAC--GCCGACU--UCGGCa---UGuu -5'
10748 5' -58.1 NC_002794.1 + 192151 0.68 0.71838
Target:  5'- -cGGCGCggucGCGGC-GGAGCC-UGCGGu -3'
miRNA:   3'- gaCCGCGa---CGCCGaCUUCGGcAUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.