miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10749 5' -51.9 NC_002794.1 + 142178 0.66 0.996552
Target:  5'- cGuCGGCaGC-GCGAGGAGcGGCaGUGCg -3'
miRNA:   3'- cCuGCUGaCGaUGCUCCUC-UUG-CACG- -5'
10749 5' -51.9 NC_002794.1 + 91036 0.66 0.996552
Target:  5'- uGGGCGGCc-CU-CGGGGuGGACGggGCg -3'
miRNA:   3'- -CCUGCUGacGAuGCUCCuCUUGCa-CG- -5'
10749 5' -51.9 NC_002794.1 + 101283 0.66 0.996552
Target:  5'- uGGCGGCgGCgGgGAGGAGAcgACGUa- -3'
miRNA:   3'- cCUGCUGaCGaUgCUCCUCU--UGCAcg -5'
10749 5' -51.9 NC_002794.1 + 179938 0.66 0.996552
Target:  5'- aGACGAC-GUcGCGGgccGGGGAGCGaGCg -3'
miRNA:   3'- cCUGCUGaCGaUGCU---CCUCUUGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 157716 0.66 0.996552
Target:  5'- -cGCGACgguucGUUACcuggaagcgGAGGAGAGCGUucGCg -3'
miRNA:   3'- ccUGCUGa----CGAUG---------CUCCUCUUGCA--CG- -5'
10749 5' -51.9 NC_002794.1 + 30658 0.66 0.996214
Target:  5'- -aACGACuUGCUguACGAGGcgaucucgcacguccGGcgGACGUGCa -3'
miRNA:   3'- ccUGCUG-ACGA--UGCUCC---------------UC--UUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 19828 0.66 0.995973
Target:  5'- uGGAUcaaGCUGCUgcacggcuACGGGGAcuGCGUGUc -3'
miRNA:   3'- -CCUGc--UGACGA--------UGCUCCUcuUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 20643 0.66 0.995973
Target:  5'- cGACGGCUGgUGCGAgcaaGGGGuccuGC-UGCu -3'
miRNA:   3'- cCUGCUGACgAUGCU----CCUCu---UGcACG- -5'
10749 5' -51.9 NC_002794.1 + 147287 0.66 0.995973
Target:  5'- --cCGGCUGCacgaUcaucuucggacACGAGGAGuuCGUGCg -3'
miRNA:   3'- ccuGCUGACG----A-----------UGCUCCUCuuGCACG- -5'
10749 5' -51.9 NC_002794.1 + 24825 0.66 0.995973
Target:  5'- cGACGACggGUcACGGGGAGAccucGCGa-- -3'
miRNA:   3'- cCUGCUGa-CGaUGCUCCUCU----UGCacg -5'
10749 5' -51.9 NC_002794.1 + 8619 0.66 0.995317
Target:  5'- -uACGACgUGCggagcGCGGuGGAaGACGUGCg -3'
miRNA:   3'- ccUGCUG-ACGa----UGCU-CCUcUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 118270 0.66 0.995317
Target:  5'- gGGGCGGCgGCgccgGCGucGGGGAccGCGccggGCg -3'
miRNA:   3'- -CCUGCUGaCGa---UGCu-CCUCU--UGCa---CG- -5'
10749 5' -51.9 NC_002794.1 + 122241 0.66 0.995317
Target:  5'- cGGACG-CUGCUGuCGAGccuGAcguACGUGa -3'
miRNA:   3'- -CCUGCuGACGAU-GCUCcu-CU---UGCACg -5'
10749 5' -51.9 NC_002794.1 + 112347 0.66 0.995317
Target:  5'- cGGCGGCgccgGCgGCGGGGcggGGAGC-UGCu -3'
miRNA:   3'- cCUGCUGa---CGaUGCUCC---UCUUGcACG- -5'
10749 5' -51.9 NC_002794.1 + 179631 0.66 0.995317
Target:  5'- cGGGCG-CUGCgACGgaaAGGAGAagucagGCGgGCu -3'
miRNA:   3'- -CCUGCuGACGaUGC---UCCUCU------UGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 128095 0.66 0.995317
Target:  5'- cGGCGACggggaGCUcgACGGGGGGcuCG-GCg -3'
miRNA:   3'- cCUGCUGa----CGA--UGCUCCUCuuGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 180365 0.66 0.995317
Target:  5'- aGGACGACcgGC-GCGAGGA---CGcUGCc -3'
miRNA:   3'- -CCUGCUGa-CGaUGCUCCUcuuGC-ACG- -5'
10749 5' -51.9 NC_002794.1 + 107649 0.66 0.994883
Target:  5'- -cGCGAacGUcGCGAGGAGAgcggagaaccuuuuuGCGUGCu -3'
miRNA:   3'- ccUGCUgaCGaUGCUCCUCU---------------UGCACG- -5'
10749 5' -51.9 NC_002794.1 + 86974 0.66 0.994576
Target:  5'- cGGCGAgCUGCgACGAGGuccGGCG-GCu -3'
miRNA:   3'- cCUGCU-GACGaUGCUCCuc-UUGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 102529 0.66 0.994576
Target:  5'- gGGACGACcucuucucggGCcGCGuGGAGAcgGCG-GCc -3'
miRNA:   3'- -CCUGCUGa---------CGaUGCuCCUCU--UGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.