Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10749 | 5' | -51.9 | NC_002794.1 | + | 102529 | 0.66 | 0.994576 |
Target: 5'- gGGACGACcucuucucggGCcGCGuGGAGAcgGCG-GCc -3' miRNA: 3'- -CCUGCUGa---------CGaUGCuCCUCU--UGCaCG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 179631 | 0.66 | 0.995317 |
Target: 5'- cGGGCG-CUGCgACGgaaAGGAGAagucagGCGgGCu -3' miRNA: 3'- -CCUGCuGACGaUGC---UCCUCU------UGCaCG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 112347 | 0.66 | 0.995317 |
Target: 5'- cGGCGGCgccgGCgGCGGGGcggGGAGC-UGCu -3' miRNA: 3'- cCUGCUGa---CGaUGCUCC---UCUUGcACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 122241 | 0.66 | 0.995317 |
Target: 5'- cGGACG-CUGCUGuCGAGccuGAcguACGUGa -3' miRNA: 3'- -CCUGCuGACGAU-GCUCcu-CU---UGCACg -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 118270 | 0.66 | 0.995317 |
Target: 5'- gGGGCGGCgGCgccgGCGucGGGGAccGCGccggGCg -3' miRNA: 3'- -CCUGCUGaCGa---UGCu-CCUCU--UGCa---CG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 107649 | 0.66 | 0.994883 |
Target: 5'- -cGCGAacGUcGCGAGGAGAgcggagaaccuuuuuGCGUGCu -3' miRNA: 3'- ccUGCUgaCGaUGCUCCUCU---------------UGCACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 8619 | 0.66 | 0.995317 |
Target: 5'- -uACGACgUGCggagcGCGGuGGAaGACGUGCg -3' miRNA: 3'- ccUGCUG-ACGa----UGCU-CCUcUUGCACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 123291 | 0.66 | 0.994576 |
Target: 5'- cGGGaGAcCUGCUGCugGAGGAGAucuuCGaGCa -3' miRNA: 3'- -CCUgCU-GACGAUG--CUCCUCUu---GCaCG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 86974 | 0.66 | 0.994576 |
Target: 5'- cGGCGAgCUGCgACGAGGuccGGCG-GCu -3' miRNA: 3'- cCUGCU-GACGaUGCUCCuc-UUGCaCG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 128095 | 0.66 | 0.995317 |
Target: 5'- cGGCGACggggaGCUcgACGGGGGGcuCG-GCg -3' miRNA: 3'- cCUGCUGa----CGA--UGCUCCUCuuGCaCG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 180365 | 0.66 | 0.995317 |
Target: 5'- aGGACGACcgGC-GCGAGGA---CGcUGCc -3' miRNA: 3'- -CCUGCUGa-CGaUGCUCCUcuuGC-ACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 19828 | 0.66 | 0.995973 |
Target: 5'- uGGAUcaaGCUGCUgcacggcuACGGGGAcuGCGUGUc -3' miRNA: 3'- -CCUGc--UGACGA--------UGCUCCUcuUGCACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 157716 | 0.66 | 0.996552 |
Target: 5'- -cGCGACgguucGUUACcuggaagcgGAGGAGAGCGUucGCg -3' miRNA: 3'- ccUGCUGa----CGAUG---------CUCCUCUUGCA--CG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 179938 | 0.66 | 0.996552 |
Target: 5'- aGACGAC-GUcGCGGgccGGGGAGCGaGCg -3' miRNA: 3'- cCUGCUGaCGaUGCU---CCUCUUGCaCG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 101283 | 0.66 | 0.996552 |
Target: 5'- uGGCGGCgGCgGgGAGGAGAcgACGUa- -3' miRNA: 3'- cCUGCUGaCGaUgCUCCUCU--UGCAcg -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 24825 | 0.66 | 0.995973 |
Target: 5'- cGACGACggGUcACGGGGAGAccucGCGa-- -3' miRNA: 3'- cCUGCUGa-CGaUGCUCCUCU----UGCacg -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 30658 | 0.66 | 0.996214 |
Target: 5'- -aACGACuUGCUguACGAGGcgaucucgcacguccGGcgGACGUGCa -3' miRNA: 3'- ccUGCUG-ACGA--UGCUCC---------------UC--UUGCACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 91036 | 0.66 | 0.996552 |
Target: 5'- uGGGCGGCc-CU-CGGGGuGGACGggGCg -3' miRNA: 3'- -CCUGCUGacGAuGCUCCuCUUGCa-CG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 147287 | 0.66 | 0.995973 |
Target: 5'- --cCGGCUGCacgaUcaucuucggacACGAGGAGuuCGUGCg -3' miRNA: 3'- ccuGCUGACG----A-----------UGCUCCUCuuGCACG- -5' |
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10749 | 5' | -51.9 | NC_002794.1 | + | 20643 | 0.66 | 0.995973 |
Target: 5'- cGACGGCUGgUGCGAgcaaGGGGuccuGC-UGCu -3' miRNA: 3'- cCUGCUGACgAUGCU----CCUCu---UGcACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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