miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10749 5' -51.9 NC_002794.1 + 123165 1.14 0.005621
Target:  5'- uGGACGACUGCUACGAGGAGAACGUGCc -3'
miRNA:   3'- -CCUGCUGACGAUGCUCCUCUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 93851 0.79 0.555987
Target:  5'- uGGACGGCcGCggcgGCGAGccgcccgaguacGAGGACGUGCu -3'
miRNA:   3'- -CCUGCUGaCGa---UGCUC------------CUCUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 146649 0.76 0.717054
Target:  5'- cGGCGACgaacacgagccguUGCUggACGAGGAGGACGUcucgGCg -3'
miRNA:   3'- cCUGCUG-------------ACGA--UGCUCCUCUUGCA----CG- -5'
10749 5' -51.9 NC_002794.1 + 120646 0.74 0.811973
Target:  5'- uGACGACgagagGCgggGCGAGGuGAuguACGUGUa -3'
miRNA:   3'- cCUGCUGa----CGa--UGCUCCuCU---UGCACG- -5'
10749 5' -51.9 NC_002794.1 + 112118 0.73 0.845486
Target:  5'- gGGACGACgGC-GCGGGGAGGuagauCG-GCa -3'
miRNA:   3'- -CCUGCUGaCGaUGCUCCUCUu----GCaCG- -5'
10749 5' -51.9 NC_002794.1 + 105859 0.73 0.8534
Target:  5'- uGGACGACgugaGCgGCGccGAGGACGUGg -3'
miRNA:   3'- -CCUGCUGa---CGaUGCucCUCUUGCACg -5'
10749 5' -51.9 NC_002794.1 + 55276 0.73 0.861115
Target:  5'- gGGGCGGCggugGCgGCGAcGAGGGCGgcgGCg -3'
miRNA:   3'- -CCUGCUGa---CGaUGCUcCUCUUGCa--CG- -5'
10749 5' -51.9 NC_002794.1 + 94151 0.73 0.866393
Target:  5'- cGGCGGC-GCUggacggugggggggACGGGGAcGAAUGUGCg -3'
miRNA:   3'- cCUGCUGaCGA--------------UGCUCCU-CUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 17999 0.73 0.868623
Target:  5'- cGGCGAgUaCUACGAGGAcGGCGUGUu -3'
miRNA:   3'- cCUGCUgAcGAUGCUCCUcUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 123618 0.73 0.87592
Target:  5'- gGGACGcGCUGC-GCGAGGAcauGAGCGcguucgggaUGCg -3'
miRNA:   3'- -CCUGC-UGACGaUGCUCCU---CUUGC---------ACG- -5'
10749 5' -51.9 NC_002794.1 + 149485 0.72 0.883001
Target:  5'- gGGGCGGCaUGCU-CGGGGAugggGAugGUGa -3'
miRNA:   3'- -CCUGCUG-ACGAuGCUCCU----CUugCACg -5'
10749 5' -51.9 NC_002794.1 + 107224 0.72 0.902895
Target:  5'- cGGGCGGC-GCgcgACGGGGGcGGCGUcGCg -3'
miRNA:   3'- -CCUGCUGaCGa--UGCUCCUcUUGCA-CG- -5'
10749 5' -51.9 NC_002794.1 + 149289 0.72 0.909065
Target:  5'- cGGCGGCUcGCUcACGGGGGGcGgGUGUa -3'
miRNA:   3'- cCUGCUGA-CGA-UGCUCCUCuUgCACG- -5'
10749 5' -51.9 NC_002794.1 + 139271 0.72 0.909065
Target:  5'- -uGCGACUGCguuuccgaUACGAcaccuGGcGGAGCGUGCg -3'
miRNA:   3'- ccUGCUGACG--------AUGCU-----CC-UCUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 118813 0.71 0.915001
Target:  5'- uGGGCuuGCUGCccgACGAGGAcgagaugaaGAGCGUGUc -3'
miRNA:   3'- -CCUGc-UGACGa--UGCUCCU---------CUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 150213 0.71 0.915001
Target:  5'- -aGCGGCUGCUGcCGAGcu--GCGUGCg -3'
miRNA:   3'- ccUGCUGACGAU-GCUCcucuUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 127957 0.71 0.9207
Target:  5'- cGugGACgugGCUACGAGcGAcccuGGugGUGUg -3'
miRNA:   3'- cCugCUGa--CGAUGCUC-CU----CUugCACG- -5'
10749 5' -51.9 NC_002794.1 + 14687 0.71 0.925626
Target:  5'- cGGuCGcGCUGCUccugacgGCGuGGGGAGCGcUGCu -3'
miRNA:   3'- -CCuGC-UGACGA-------UGCuCCUCUUGC-ACG- -5'
10749 5' -51.9 NC_002794.1 + 94734 0.71 0.926162
Target:  5'- aGAUG-CUGCUGCGcugccucuacGAGGACGUGCu -3'
miRNA:   3'- cCUGCuGACGAUGCuc--------CUCUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 141348 0.71 0.931385
Target:  5'- aGACGAgaGCaGCGAcGAGAGCG-GCg -3'
miRNA:   3'- cCUGCUgaCGaUGCUcCUCUUGCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.