miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10749 5' -51.9 NC_002794.1 + 123291 0.66 0.994576
Target:  5'- cGGGaGAcCUGCUGCugGAGGAGAucuuCGaGCa -3'
miRNA:   3'- -CCUgCU-GACGAUG--CUCCUCUu---GCaCG- -5'
10749 5' -51.9 NC_002794.1 + 94825 0.66 0.993743
Target:  5'- cGGCGGgUGCUGCGGcuGGAccGCuGUGCc -3'
miRNA:   3'- cCUGCUgACGAUGCU--CCUcuUG-CACG- -5'
10749 5' -51.9 NC_002794.1 + 96880 0.66 0.993743
Target:  5'- cGGACGGUggcGCUACGGGGcaGGCGUcggGCg -3'
miRNA:   3'- -CCUGCUGa--CGAUGCUCCucUUGCA---CG- -5'
10749 5' -51.9 NC_002794.1 + 97475 0.66 0.993743
Target:  5'- cGGAuccacgUGGCU-CUACaAGGAGA-CGUGCa -3'
miRNA:   3'- -CCU------GCUGAcGAUGcUCCUCUuGCACG- -5'
10749 5' -51.9 NC_002794.1 + 122452 0.67 0.99281
Target:  5'- -aGCGGCUGCUGgGcucGGuGAACGcGCu -3'
miRNA:   3'- ccUGCUGACGAUgCu--CCuCUUGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 102453 0.67 0.99281
Target:  5'- --cUGAC-GCU-CGAGGAGAugcggcgcgucgGCGUGCc -3'
miRNA:   3'- ccuGCUGaCGAuGCUCCUCU------------UGCACG- -5'
10749 5' -51.9 NC_002794.1 + 142319 0.67 0.99281
Target:  5'- aGGCGGCgGCgcagGCGGcGGAGGcgGCGgagGCg -3'
miRNA:   3'- cCUGCUGaCGa---UGCU-CCUCU--UGCa--CG- -5'
10749 5' -51.9 NC_002794.1 + 90823 0.67 0.99177
Target:  5'- cGGACGcCcaucagucGgUACGAGGGcGGCGUGCu -3'
miRNA:   3'- -CCUGCuGa-------CgAUGCUCCUcUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 83038 0.67 0.99177
Target:  5'- cGGGCGGCacccACGGcGGAGGACGaGCg -3'
miRNA:   3'- -CCUGCUGacgaUGCU-CCUCUUGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 66843 0.67 0.99177
Target:  5'- cGGGCGcCgccgucgGCgcgGCGAGGccgcGGCGUGCg -3'
miRNA:   3'- -CCUGCuGa------CGa--UGCUCCuc--UUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 79984 0.67 0.990614
Target:  5'- cGGCGACgaggagGCg--GAGGAGGACGaggacgGCg -3'
miRNA:   3'- cCUGCUGa-----CGaugCUCCUCUUGCa-----CG- -5'
10749 5' -51.9 NC_002794.1 + 125565 0.67 0.989334
Target:  5'- cGGCGAC-GCcaAgGAGGAGAGCGacaGCg -3'
miRNA:   3'- cCUGCUGaCGa-UgCUCCUCUUGCa--CG- -5'
10749 5' -51.9 NC_002794.1 + 95555 0.67 0.989334
Target:  5'- aGGCGcaGCUGg-GCGAGGAcGAGCG-GCu -3'
miRNA:   3'- cCUGC--UGACgaUGCUCCU-CUUGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 194763 0.67 0.989334
Target:  5'- cGGCGACUGCU-Cc--GAGAACGgccgGCa -3'
miRNA:   3'- cCUGCUGACGAuGcucCUCUUGCa---CG- -5'
10749 5' -51.9 NC_002794.1 + 99653 0.67 0.989334
Target:  5'- ---gGGCUGUcugUACGAcGGGGAGCGgggGCu -3'
miRNA:   3'- ccugCUGACG---AUGCU-CCUCUUGCa--CG- -5'
10749 5' -51.9 NC_002794.1 + 55235 0.67 0.987922
Target:  5'- cGACGACgaUGaagacgACGAGGAGGACGc-- -3'
miRNA:   3'- cCUGCUG--ACga----UGCUCCUCUUGCacg -5'
10749 5' -51.9 NC_002794.1 + 117213 0.67 0.987922
Target:  5'- cGGGCGGCUccgGCcGCGucAGGGcGAccgacGCGUGCa -3'
miRNA:   3'- -CCUGCUGA---CGaUGC--UCCU-CU-----UGCACG- -5'
10749 5' -51.9 NC_002794.1 + 66963 0.67 0.987922
Target:  5'- cGGCGAgUcGCUcGCcGGGGGAGCGUcGCg -3'
miRNA:   3'- cCUGCUgA-CGA-UGcUCCUCUUGCA-CG- -5'
10749 5' -51.9 NC_002794.1 + 143299 0.67 0.987922
Target:  5'- cGGGCGGgUGCaGCGcGGcGGGAuggaagucggucGCGUGCu -3'
miRNA:   3'- -CCUGCUgACGaUGC-UC-CUCU------------UGCACG- -5'
10749 5' -51.9 NC_002794.1 + 107552 0.68 0.986369
Target:  5'- cGACGACcGCgguggGgGAGGAGGAgGagGCg -3'
miRNA:   3'- cCUGCUGaCGa----UgCUCCUCUUgCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.