miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10749 5' -51.9 NC_002794.1 + 1293 0.68 0.984489
Target:  5'- aGGAcCGGCcGCUggccaaaAUGAGGA-AGCGUGCc -3'
miRNA:   3'- -CCU-GCUGaCGA-------UGCUCCUcUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 8287 0.7 0.941119
Target:  5'- --cCGACUccaGCUccgACGAGGAGGGCGaagGCg -3'
miRNA:   3'- ccuGCUGA---CGA---UGCUCCUCUUGCa--CG- -5'
10749 5' -51.9 NC_002794.1 + 8619 0.66 0.995317
Target:  5'- -uACGACgUGCggagcGCGGuGGAaGACGUGCg -3'
miRNA:   3'- ccUGCUG-ACGa----UGCU-CCUcUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 10764 0.7 0.957783
Target:  5'- aGACGACgGCgGCGuGGAGcuGCaGUGCg -3'
miRNA:   3'- cCUGCUGaCGaUGCuCCUCu-UG-CACG- -5'
10749 5' -51.9 NC_002794.1 + 11921 0.7 0.953566
Target:  5'- uGACGACgGCcACGGugaucgcgaucgcGGuGAGCGUGCu -3'
miRNA:   3'- cCUGCUGaCGaUGCU-------------CCuCUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 14687 0.71 0.925626
Target:  5'- cGGuCGcGCUGCUccugacgGCGuGGGGAGCGcUGCu -3'
miRNA:   3'- -CCuGC-UGACGA-------UGCuCCUCUUGC-ACG- -5'
10749 5' -51.9 NC_002794.1 + 16061 0.69 0.961382
Target:  5'- cGGGgGACUGCUGCucaccaucGGGGucguGAGCGUcacGCu -3'
miRNA:   3'- -CCUgCUGACGAUG--------CUCCu---CUUGCA---CG- -5'
10749 5' -51.9 NC_002794.1 + 17999 0.73 0.868623
Target:  5'- cGGCGAgUaCUACGAGGAcGGCGUGUu -3'
miRNA:   3'- cCUGCUgAcGAUGCUCCUcUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 19828 0.66 0.995973
Target:  5'- uGGAUcaaGCUGCUgcacggcuACGGGGAcuGCGUGUc -3'
miRNA:   3'- -CCUGc--UGACGA--------UGCUCCUcuUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 20643 0.66 0.995973
Target:  5'- cGACGGCUGgUGCGAgcaaGGGGuccuGC-UGCu -3'
miRNA:   3'- cCUGCUGACgAUGCU----CCUCu---UGcACG- -5'
10749 5' -51.9 NC_002794.1 + 24825 0.66 0.995973
Target:  5'- cGACGACggGUcACGGGGAGAccucGCGa-- -3'
miRNA:   3'- cCUGCUGa-CGaUGCUCCUCU----UGCacg -5'
10749 5' -51.9 NC_002794.1 + 26649 0.68 0.982809
Target:  5'- cGGACGGCggccgGCUcgucgGCGGGGuGGAGCGc-- -3'
miRNA:   3'- -CCUGCUGa----CGA-----UGCUCC-UCUUGCacg -5'
10749 5' -51.9 NC_002794.1 + 30658 0.66 0.996214
Target:  5'- -aACGACuUGCUguACGAGGcgaucucgcacguccGGcgGACGUGCa -3'
miRNA:   3'- ccUGCUG-ACGA--UGCUCC---------------UC--UUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 44344 0.68 0.97859
Target:  5'- aGACGGC-GCcgGCGAGaccGAGAGCGcgGCg -3'
miRNA:   3'- cCUGCUGaCGa-UGCUC---CUCUUGCa-CG- -5'
10749 5' -51.9 NC_002794.1 + 45285 0.68 0.986369
Target:  5'- uGAUggGACUG-UACGAGGc-GACGUGCa -3'
miRNA:   3'- cCUG--CUGACgAUGCUCCucUUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 54316 0.68 0.97859
Target:  5'- aGGAUGaACUGCUugGucaGGAACG-GCa -3'
miRNA:   3'- -CCUGC-UGACGAugCuccUCUUGCaCG- -5'
10749 5' -51.9 NC_002794.1 + 55235 0.67 0.987922
Target:  5'- cGACGACgaUGaagacgACGAGGAGGACGc-- -3'
miRNA:   3'- cCUGCUG--ACga----UGCUCCUCUUGCacg -5'
10749 5' -51.9 NC_002794.1 + 55276 0.73 0.861115
Target:  5'- gGGGCGGCggugGCgGCGAcGAGGGCGgcgGCg -3'
miRNA:   3'- -CCUGCUGa---CGaUGCUcCUCUUGCa--CG- -5'
10749 5' -51.9 NC_002794.1 + 66843 0.67 0.99177
Target:  5'- cGGGCGcCgccgucgGCgcgGCGAGGccgcGGCGUGCg -3'
miRNA:   3'- -CCUGCuGa------CGa--UGCUCCuc--UUGCACG- -5'
10749 5' -51.9 NC_002794.1 + 66963 0.67 0.987922
Target:  5'- cGGCGAgUcGCUcGCcGGGGGAGCGUcGCg -3'
miRNA:   3'- cCUGCUgA-CGA-UGcUCCUCUUGCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.