miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10750 3' -51.9 NC_002794.1 + 91474 0.66 0.996472
Target:  5'- aCGCcGGGCGAgcgcgaccagcUGUUgCUGUGCGAcGCc -3'
miRNA:   3'- cGUGaCCUGCU-----------ACAAgGGCAUGCU-CG- -5'
10750 3' -51.9 NC_002794.1 + 105973 0.66 0.995882
Target:  5'- cCGC-GGACGA-GUUUCCGgucgcguuCGAGCc -3'
miRNA:   3'- cGUGaCCUGCUaCAAGGGCau------GCUCG- -5'
10750 3' -51.9 NC_002794.1 + 149641 0.66 0.995882
Target:  5'- aCGCgUGGAUGcgGUUCgCCGaggaggcCGAGCg -3'
miRNA:   3'- cGUG-ACCUGCuaCAAG-GGCau-----GCUCG- -5'
10750 3' -51.9 NC_002794.1 + 67203 0.66 0.995882
Target:  5'- aGCGuCcGGGCGGUGcgCUCGgcgcCGGGCg -3'
miRNA:   3'- -CGU-GaCCUGCUACaaGGGCau--GCUCG- -5'
10750 3' -51.9 NC_002794.1 + 90331 0.66 0.994458
Target:  5'- cGCAgCUGGugGccGUcggCCUGUGCGuccuguGCa -3'
miRNA:   3'- -CGU-GACCugCuaCAa--GGGCAUGCu-----CG- -5'
10750 3' -51.9 NC_002794.1 + 23098 0.66 0.994458
Target:  5'- aGCAC-GGACGuggcGUcCCCGUugGccuGCg -3'
miRNA:   3'- -CGUGaCCUGCua--CAaGGGCAugCu--CG- -5'
10750 3' -51.9 NC_002794.1 + 115725 0.66 0.993611
Target:  5'- cCACUGGGCGGUcgggGggCCCuggaucagGUACGGcGCg -3'
miRNA:   3'- cGUGACCUGCUA----CaaGGG--------CAUGCU-CG- -5'
10750 3' -51.9 NC_002794.1 + 89478 0.66 0.993611
Target:  5'- -gACUccGGccuGCGGUGUcUCCCGcgaUGCGGGCa -3'
miRNA:   3'- cgUGA--CC---UGCUACA-AGGGC---AUGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 149165 0.66 0.993611
Target:  5'- cGUGCUGGccuCGggGUUUCUaGUcaGCGAGCa -3'
miRNA:   3'- -CGUGACCu--GCuaCAAGGG-CA--UGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 94780 0.67 0.992662
Target:  5'- gGCGCUGGGCGA-GUUCgagCGgcACGGGg -3'
miRNA:   3'- -CGUGACCUGCUaCAAGg--GCa-UGCUCg -5'
10750 3' -51.9 NC_002794.1 + 159542 0.67 0.992662
Target:  5'- cGgACUaGuGACGAUcucUCCCGUGuCGAGCc -3'
miRNA:   3'- -CgUGA-C-CUGCUAca-AGGGCAU-GCUCG- -5'
10750 3' -51.9 NC_002794.1 + 100600 0.67 0.99204
Target:  5'- cGCGCcgaucccggggguguUGGucuACGA-GUUCCCGUcCGAGUu -3'
miRNA:   3'- -CGUG---------------ACC---UGCUaCAAGGGCAuGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 135650 0.67 0.991604
Target:  5'- aGCGCggagggugGGGgGGUGUccUCCaCG-ACGGGCa -3'
miRNA:   3'- -CGUGa-------CCUgCUACA--AGG-GCaUGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 150735 0.67 0.990429
Target:  5'- -gGCU-GACcgcGUUCCCGUGCGuGCa -3'
miRNA:   3'- cgUGAcCUGcuaCAAGGGCAUGCuCG- -5'
10750 3' -51.9 NC_002794.1 + 62103 0.67 0.990429
Target:  5'- cGCGCcGGACGGUcuggUgCGUGuCGAGCg -3'
miRNA:   3'- -CGUGaCCUGCUAcaa-GgGCAU-GCUCG- -5'
10750 3' -51.9 NC_002794.1 + 88930 0.67 0.988712
Target:  5'- cGCGgUGcGGCGAUGgcgcgguguaacucgCUCgGUACGAGCg -3'
miRNA:   3'- -CGUgAC-CUGCUACaa-------------GGG-CAUGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 183115 0.67 0.987694
Target:  5'- cGCACguguucGGCGGcgGcUCCCGUACGcGCa -3'
miRNA:   3'- -CGUGac----CUGCUa-CaAGGGCAUGCuCG- -5'
10750 3' -51.9 NC_002794.1 + 181819 0.68 0.986118
Target:  5'- cGCACgucgGGGuuCGcgGccaggUCCCGgGCGAGCu -3'
miRNA:   3'- -CGUGa---CCU--GCuaCa----AGGGCaUGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 115826 0.68 0.984392
Target:  5'- cGC-CUGGAuCGGcgGggCCCG-GCGGGCu -3'
miRNA:   3'- -CGuGACCU-GCUa-CaaGGGCaUGCUCG- -5'
10750 3' -51.9 NC_002794.1 + 106327 0.68 0.984392
Target:  5'- cGCGCgacgGGuCGAcgGUUCgCCGggucgacgGCGGGCg -3'
miRNA:   3'- -CGUGa---CCuGCUa-CAAG-GGCa-------UGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.