miRNA display CGI


Results 1 - 20 of 478 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 59662 0.66 0.472449
Target:  5'- aCGgCGCUGCagaGCCGCCugcGCCuGCaCcCGGg -3'
miRNA:   3'- -GCgGCGACGg--CGGCGG---CGG-CG-GcGCC- -5'
10751 3' -68.6 NC_002794.1 + 3809 0.66 0.472449
Target:  5'- gGUCGgUGCCaaCCGCCcCCGCagagGCGGa -3'
miRNA:   3'- gCGGCgACGGc-GGCGGcGGCGg---CGCC- -5'
10751 3' -68.6 NC_002794.1 + 14205 0.66 0.472449
Target:  5'- gGcCCGCUgGCCGCCccaacGCCacCCGCCGaCGa -3'
miRNA:   3'- gC-GGCGA-CGGCGG-----CGGc-GGCGGC-GCc -5'
10751 3' -68.6 NC_002794.1 + 185405 0.66 0.472449
Target:  5'- gGgCGCggGcCCGaCCGCCGUCGacucgaCGCGGc -3'
miRNA:   3'- gCgGCGa-C-GGC-GGCGGCGGCg-----GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 111111 0.66 0.472449
Target:  5'- gGaCCGUgGCCGUCGaCGgCGCCgGCGGc -3'
miRNA:   3'- gC-GGCGaCGGCGGCgGCgGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 147045 0.66 0.472449
Target:  5'- aGCCGUcgGCgGCCGgucuaaggaCGgaGCCGCGGg -3'
miRNA:   3'- gCGGCGa-CGgCGGCg--------GCggCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 191188 0.66 0.472449
Target:  5'- gCGCuCGCccgGCCGcCCGcCCGCuCGCuCGCu- -3'
miRNA:   3'- -GCG-GCGa--CGGC-GGC-GGCG-GCG-GCGcc -5'
10751 3' -68.6 NC_002794.1 + 70070 0.66 0.471607
Target:  5'- gGCCGCaGCCGCaGCaaggcgaCGCagGCCGCGc -3'
miRNA:   3'- gCGGCGaCGGCGgCG-------GCGg-CGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 111360 0.66 0.46406
Target:  5'- aGUCGCUGUC-CCaCaggaGCCGCCGCa- -3'
miRNA:   3'- gCGGCGACGGcGGcGg---CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 17485 0.66 0.46406
Target:  5'- aCGCCGCguuUGCgauCGCCGaCGCCgGCCGagauCGGc -3'
miRNA:   3'- -GCGGCG---ACG---GCGGCgGCGG-CGGC----GCC- -5'
10751 3' -68.6 NC_002794.1 + 70564 0.66 0.46406
Target:  5'- aGCCGCuccagaucgcucUGCCGa-GUCGCCGaCUGCGu -3'
miRNA:   3'- gCGGCG------------ACGGCggCGGCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 253 0.66 0.46406
Target:  5'- -cCCGgaCUGCCGCCGCgCGCgCGgaCGCGa -3'
miRNA:   3'- gcGGC--GACGGCGGCG-GCG-GCg-GCGCc -5'
10751 3' -68.6 NC_002794.1 + 193808 0.66 0.46406
Target:  5'- gCGcCCGCUcGuCUGgCGCCGaCgCGUCGCGGc -3'
miRNA:   3'- -GC-GGCGA-C-GGCgGCGGC-G-GCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 46198 0.66 0.46406
Target:  5'- -aCCGC-GCuCGCuCGCCGCCGUUcCGGc -3'
miRNA:   3'- gcGGCGaCG-GCG-GCGGCGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 103835 0.66 0.459064
Target:  5'- aGUCGCagGCCuugaccaccgagcggGCCGCCGCCGacgagaGCGa -3'
miRNA:   3'- gCGGCGa-CGG---------------CGGCGGCGGCgg----CGCc -5'
10751 3' -68.6 NC_002794.1 + 107000 0.66 0.459064
Target:  5'- gCGgCGCUgGCCGacgcgacggugcucaCCGCggCGCCGCUGgGGa -3'
miRNA:   3'- -GCgGCGA-CGGC---------------GGCG--GCGGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 16275 0.66 0.459064
Target:  5'- gCGCCGC-GCC-CCuguuggcggagucuaGCCugGCgGCCGCGGc -3'
miRNA:   3'- -GCGGCGaCGGcGG---------------CGG--CGgCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 127486 0.66 0.459064
Target:  5'- cCGCCGCUcugcGCCgggaaaugcucaggaGCUgggGCUguGCCGCCGCGa -3'
miRNA:   3'- -GCGGCGA----CGG---------------CGG---CGG--CGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 152780 0.66 0.455749
Target:  5'- aCGCCagacGCUGaCCGCgCGCgaGCUGCUGCu- -3'
miRNA:   3'- -GCGG----CGAC-GGCG-GCGg-CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 112690 0.66 0.455749
Target:  5'- uGCCGCgucaCCGCgGCCaGCUuCuCGCGGg -3'
miRNA:   3'- gCGGCGac--GGCGgCGG-CGGcG-GCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.