miRNA display CGI


Results 41 - 60 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 14205 0.66 0.472449
Target:  5'- gGcCCGCUgGCCGCCccaacGCCacCCGCCGaCGa -3'
miRNA:   3'- gC-GGCGA-CGGCGG-----CGGc-GGCGGC-GCc -5'
10751 3' -68.6 NC_002794.1 + 185405 0.66 0.472449
Target:  5'- gGgCGCggGcCCGaCCGCCGUCGacucgaCGCGGc -3'
miRNA:   3'- gCgGCGa-C-GGC-GGCGGCGGCg-----GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 111111 0.66 0.472449
Target:  5'- gGaCCGUgGCCGUCGaCGgCGCCgGCGGc -3'
miRNA:   3'- gC-GGCGaCGGCGGCgGCgGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 147045 0.66 0.472449
Target:  5'- aGCCGUcgGCgGCCGgucuaaggaCGgaGCCGCGGg -3'
miRNA:   3'- gCGGCGa-CGgCGGCg--------GCggCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 191188 0.66 0.472449
Target:  5'- gCGCuCGCccgGCCGcCCGcCCGCuCGCuCGCu- -3'
miRNA:   3'- -GCG-GCGa--CGGC-GGC-GGCG-GCG-GCGcc -5'
10751 3' -68.6 NC_002794.1 + 111360 0.66 0.46406
Target:  5'- aGUCGCUGUC-CCaCaggaGCCGCCGCa- -3'
miRNA:   3'- gCGGCGACGGcGGcGg---CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 16275 0.66 0.459064
Target:  5'- gCGCCGC-GCC-CCuguuggcggagucuaGCCugGCgGCCGCGGc -3'
miRNA:   3'- -GCGGCGaCGGcGG---------------CGG--CGgCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 58662 0.66 0.455749
Target:  5'- gGCUGCUGCaGCCgGCCG-UGCaCGCGc -3'
miRNA:   3'- gCGGCGACGgCGG-CGGCgGCG-GCGCc -5'
10751 3' -68.6 NC_002794.1 + 117369 0.66 0.455749
Target:  5'- aGCgGCggGCCGCCugcacgGUCGCgGCgaaGCGGg -3'
miRNA:   3'- gCGgCGa-CGGCGG------CGGCGgCGg--CGCC- -5'
10751 3' -68.6 NC_002794.1 + 90773 0.66 0.455749
Target:  5'- gCGCCGCUGCUGguggacCUGaCgGUCGaCCGCGa -3'
miRNA:   3'- -GCGGCGACGGC------GGC-GgCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 90738 0.66 0.455749
Target:  5'- uGUCGCUGUgCGaCCgGUCGUCGuCCGUGGc -3'
miRNA:   3'- gCGGCGACG-GC-GG-CGGCGGC-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 31345 0.66 0.455749
Target:  5'- cCGCCGUguCCGCCGcCCGCuCGUCGaaGu -3'
miRNA:   3'- -GCGGCGacGGCGGC-GGCG-GCGGCgcC- -5'
10751 3' -68.6 NC_002794.1 + 17434 0.66 0.455749
Target:  5'- -uCCGC-GCCGCCGgCGCuCGggcCCGCGa -3'
miRNA:   3'- gcGGCGaCGGCGGCgGCG-GC---GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 143498 0.66 0.455749
Target:  5'- gGCCGCgggGCUGCagaugaggaagCGCaCGUCGcCCGCGu -3'
miRNA:   3'- gCGGCGa--CGGCG-----------GCG-GCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 114117 0.66 0.455749
Target:  5'- gCGCCGacagcucguucUUGCCGCCgGCCagggcgcgcaGgCGCCGCGu -3'
miRNA:   3'- -GCGGC-----------GACGGCGG-CGG----------CgGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 112690 0.66 0.455749
Target:  5'- uGCCGCgucaCCGCgGCCaGCUuCuCGCGGg -3'
miRNA:   3'- gCGGCGac--GGCGgCGG-CGGcG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 152780 0.66 0.455749
Target:  5'- aCGCCagacGCUGaCCGCgCGCgaGCUGCUGCu- -3'
miRNA:   3'- -GCGG----CGAC-GGCG-GCGg-CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 144033 0.66 0.455749
Target:  5'- aGCCGUaucuCCGgCGCCugGCCGCCGuCGa -3'
miRNA:   3'- gCGGCGac--GGCgGCGG--CGGCGGC-GCc -5'
10751 3' -68.6 NC_002794.1 + 103835 0.66 0.459064
Target:  5'- aGUCGCagGCCuugaccaccgagcggGCCGCCGCCGacgagaGCGa -3'
miRNA:   3'- gCGGCGa-CGG---------------CGGCGGCGGCgg----CGCc -5'
10751 3' -68.6 NC_002794.1 + 107000 0.66 0.459064
Target:  5'- gCGgCGCUgGCCGacgcgacggugcucaCCGCggCGCCGCUGgGGa -3'
miRNA:   3'- -GCgGCGA-CGGC---------------GGCG--GCGGCGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.