miRNA display CGI


Results 81 - 100 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 150347 0.67 0.406884
Target:  5'- gGCUGuCUGCuCGUCGCgGCCGagaaccuCCGCGu -3'
miRNA:   3'- gCGGC-GACG-GCGGCGgCGGC-------GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 93456 0.67 0.407658
Target:  5'- uCGaCgGC-GUC-CCGCCGCCGCaCGUGGc -3'
miRNA:   3'- -GC-GgCGaCGGcGGCGGCGGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 84444 0.67 0.399956
Target:  5'- uGCCGaacgagggcCUGCCGCCGaaagCGCCGUCucCGGc -3'
miRNA:   3'- gCGGC---------GACGGCGGCg---GCGGCGGc-GCC- -5'
10751 3' -68.6 NC_002794.1 + 107759 0.67 0.399956
Target:  5'- gCGCCGCUGgCUGgaGCgCGCuCGCC-CGGc -3'
miRNA:   3'- -GCGGCGAC-GGCggCG-GCG-GCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 99215 0.67 0.400722
Target:  5'- aCGCCgaGCgcgauucguauaagaGCgGaCCGCCGgaccCCGCCGCGGa -3'
miRNA:   3'- -GCGG--CGa--------------CGgC-GGCGGC----GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 83953 0.67 0.399956
Target:  5'- gGaCCGCcuggGCCGCCuggagcGCCuggaCCGCCGCGa -3'
miRNA:   3'- gC-GGCGa---CGGCGG------CGGc---GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 82688 0.67 0.399956
Target:  5'- aCGCCGUUcgcccggcgcGCCGagacgCGCCGaggaCGCCGCGc -3'
miRNA:   3'- -GCGGCGA----------CGGCg----GCGGCg---GCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 53914 0.67 0.407658
Target:  5'- uCGUCGCcGUCGgCGgCGCCGCCGa-- -3'
miRNA:   3'- -GCGGCGaCGGCgGCgGCGGCGGCgcc -5'
10751 3' -68.6 NC_002794.1 + 86845 0.67 0.407658
Target:  5'- gGUCgGCgGCC-CCGCCGggauuggguCUGCCGCGGc -3'
miRNA:   3'- gCGG-CGaCGGcGGCGGC---------GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 32564 0.67 0.415453
Target:  5'- aGCCGCggauaGUCGCgCGCgGCggUGCCGgGGc -3'
miRNA:   3'- gCGGCGa----CGGCG-GCGgCG--GCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 75362 0.67 0.415453
Target:  5'- uCGCCaCcgacCCGCCGCgGCCGgCgGCGGc -3'
miRNA:   3'- -GCGGcGac--GGCGGCGgCGGC-GgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 58770 0.67 0.415453
Target:  5'- aGCCGCUGCUGgccuaCGUCaGCgCGCUGCa- -3'
miRNA:   3'- gCGGCGACGGCg----GCGG-CG-GCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 193365 0.67 0.415453
Target:  5'- aGCCGgUGCCacggGCCGCgcuccuCGCCGUCGUn- -3'
miRNA:   3'- gCGGCgACGG----CGGCG------GCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 184951 0.67 0.415453
Target:  5'- aGCUGC-GCCGgcCCGCgcaGCCGCuCGuCGGg -3'
miRNA:   3'- gCGGCGaCGGC--GGCGg--CGGCG-GC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 81989 0.67 0.415453
Target:  5'- gCGaCCGUUGcCCGUCGacgaCGCCGgCCGCu- -3'
miRNA:   3'- -GC-GGCGAC-GGCGGCg---GCGGC-GGCGcc -5'
10751 3' -68.6 NC_002794.1 + 194397 0.67 0.414669
Target:  5'- gCGCCGCccgGUCGuucgcguCCGCCaCCGCCGUa- -3'
miRNA:   3'- -GCGGCGa--CGGC-------GGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 101254 0.67 0.407658
Target:  5'- gCGCaGCgggggGCCGCCcCCGgCGCCgGUGGc -3'
miRNA:   3'- -GCGgCGa----CGGCGGcGGCgGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 105658 0.67 0.407658
Target:  5'- uCGCCGCgGCgCGCucCGCCcggaCCGCCG-GGa -3'
miRNA:   3'- -GCGGCGaCG-GCG--GCGGc---GGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 107217 0.67 0.407658
Target:  5'- gCGCCGCcggGCgGCgCGCgacgggggCGgCGUCGCGGa -3'
miRNA:   3'- -GCGGCGa--CGgCG-GCG--------GCgGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 99547 0.67 0.407658
Target:  5'- gGCCGCggaaaCCG-CGCgCGCCcuCCGCGGg -3'
miRNA:   3'- gCGGCGac---GGCgGCG-GCGGc-GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.