miRNA display CGI


Results 1 - 20 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 121241 1.08 0.000468
Target:  5'- uCGCCGCUGCCGCCGCCGCCGCCGCGGc -3'
miRNA:   3'- -GCGGCGACGGCGGCGGCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 53748 0.99 0.001992
Target:  5'- cCGCCGCUGCCGCCGCCGCUGCCgGCGGc -3'
miRNA:   3'- -GCGGCGACGGCGGCGGCGGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 81555 0.92 0.006431
Target:  5'- gGCUGCcGCCGCCGCCGCCGCCGCGc -3'
miRNA:   3'- gCGGCGaCGGCGGCGGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 82738 0.92 0.00693
Target:  5'- uCGCCGCgaGCCGCCGCCaCCGCCGCGGa -3'
miRNA:   3'- -GCGGCGa-CGGCGGCGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 194043 0.89 0.010577
Target:  5'- cCGCCGCcGCCGCCGCCGCCGCCGa-- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGCgcc -5'
10751 3' -68.6 NC_002794.1 + 186370 0.88 0.014606
Target:  5'- cCGCCGCcGCCGCCGUCGUCGCCGCa- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 52906 0.88 0.014248
Target:  5'- gCGCCGCcGCCGUCGCCGCCGCCGUc- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 137562 0.87 0.016533
Target:  5'- aCGUCGC-GCCGCCGUCGCCGCCGgGGc -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 111627 0.87 0.016533
Target:  5'- cCGCCGCgGCCGCCGCCGgucgggCGCCGCGGc -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCg-----GCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 32292 0.86 0.020153
Target:  5'- aCGCCGCcGCCGCCGCgGCgGCCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCGGCGgCGgCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 17647 0.86 0.020153
Target:  5'- cCGCCGCgGCCGCCGCCaCCGCCGCc- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 187540 0.86 0.018254
Target:  5'- cCGCCGCgaccGCCGCCaCCGCCGCCGuCGGg -3'
miRNA:   3'- -GCGGCGa---CGGCGGcGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 28707 0.86 0.01966
Target:  5'- uGCUGCUGCCGUCGUCGCCGCCGUc- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 61527 0.86 0.020153
Target:  5'- gGCCGCcggcgGCCGCCGCgaagacgaCGCCGCCGCGGc -3'
miRNA:   3'- gCGGCGa----CGGCGGCG--------GCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 28675 0.85 0.021704
Target:  5'- cCGCCGCcggugGCCGUCGCCGCCGCCGUu- -3'
miRNA:   3'- -GCGGCGa----CGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 107170 0.85 0.022803
Target:  5'- cCGCCGCUacgcggcggaGCCGgCGCCGCCGCCGcCGGc -3'
miRNA:   3'- -GCGGCGA----------CGGCgGCGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 49456 0.84 0.028469
Target:  5'- uCGCCGUggcGCCGCCGugaCCgGCCGCCGCGGg -3'
miRNA:   3'- -GCGGCGa--CGGCGGC---GG-CGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 38515 0.84 0.028751
Target:  5'- cCGCCGCcuccgcgaucccagGUCGCCGCCGCCGCCGCc- -3'
miRNA:   3'- -GCGGCGa-------------CGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 104409 0.84 0.02819
Target:  5'- cCGCCGCggccucggccucgGCCGCCGgcccggaCGCCGCCGCGGg -3'
miRNA:   3'- -GCGGCGa------------CGGCGGCg------GCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 56560 0.84 0.025797
Target:  5'- cCGCCGCccccGCCGCCGaCCGCCcgcGCCGCGGc -3'
miRNA:   3'- -GCGGCGa---CGGCGGC-GGCGG---CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.