Results 41 - 60 of 478 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10751 | 3' | -68.6 | NC_002794.1 | + | 192073 | 0.81 | 0.047631 |
Target: 5'- uGCUGCUGCUGCUGCUGCUGCUGCu- -3' miRNA: 3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 61870 | 0.8 | 0.048806 |
Target: 5'- aCGCCGCgcGCCGUCGUCGgCGCCGCGcGg -3' miRNA: 3'- -GCGGCGa-CGGCGGCGGCgGCGGCGC-C- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 115305 | 0.8 | 0.048806 |
Target: 5'- cCGCUGC-GCCGCCGuCCGCacgguCGCCGCGGc -3' miRNA: 3'- -GCGGCGaCGGCGGC-GGCG-----GCGGCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 151563 | 0.8 | 0.053404 |
Target: 5'- uGCUGCUGacguagCGCCccccggcggcgcgcGCCGCCGCCGCGGg -3' miRNA: 3'- gCGGCGACg-----GCGG--------------CGGCGGCGGCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 186096 | 0.8 | 0.052503 |
Target: 5'- gGgCGCUucGUCGCCGUCGCCGCCGcCGGg -3' miRNA: 3'- gCgGCGA--CGGCGGCGGCGGCGGC-GCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 184453 | 0.8 | 0.050009 |
Target: 5'- gCGCCGCUGCCGcCCGCgGgCCGCgcgaacggcgCGCGGg -3' miRNA: 3'- -GCGGCGACGGC-GGCGgC-GGCG----------GCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 63478 | 0.8 | 0.050009 |
Target: 5'- gGCgGCgGCCGCCGUCGacgaCGCCGCGGc -3' miRNA: 3'- gCGgCGaCGGCGGCGGCg---GCGGCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 192237 | 0.8 | 0.053794 |
Target: 5'- uCGgCGCUGCCGUCGCCGaCGgCGCGGu -3' miRNA: 3'- -GCgGCGACGGCGGCGGCgGCgGCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 149220 | 0.8 | 0.056471 |
Target: 5'- gGCCggaaGCgaggcGCCGCCGCCGUCGCCGgGGu -3' miRNA: 3'- gCGG----CGa----CGGCGGCGGCGGCGGCgCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 105495 | 0.79 | 0.066893 |
Target: 5'- gGUCGUggaGCCGCCGCCGCCGgUCGCGc -3' miRNA: 3'- gCGGCGa--CGGCGGCGGCGGC-GGCGCc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 103946 | 0.79 | 0.060582 |
Target: 5'- gGCCGCcGCCGCuCGCCaGCCGCCggcgcuucagacuGCGGg -3' miRNA: 3'- gCGGCGaCGGCG-GCGG-CGGCGG-------------CGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 187579 | 0.79 | 0.066893 |
Target: 5'- cCGCCGUcGgCGCgGCCGCCGUCGCGa -3' miRNA: 3'- -GCGGCGaCgGCGgCGGCGGCGGCGCc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 194010 | 0.79 | 0.062216 |
Target: 5'- uCGCCuucGCgGCCGCCGCCGCCGgCGCc- -3' miRNA: 3'- -GCGG---CGaCGGCGGCGGCGGCgGCGcc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 12165 | 0.79 | 0.060729 |
Target: 5'- uCGCCcggaucGUcGCCGCCGaCGCCGCCGCGGc -3' miRNA: 3'- -GCGG------CGaCGGCGGCgGCGGCGGCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 49384 | 0.79 | 0.063739 |
Target: 5'- aGCgCGCcagGCCGCCGCCGUCggccacggcgGCCGCGGc -3' miRNA: 3'- gCG-GCGa--CGGCGGCGGCGG----------CGGCGCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 60666 | 0.79 | 0.066893 |
Target: 5'- gCGCgCGCcGCCGCCGCCuCCGUCGaCGGg -3' miRNA: 3'- -GCG-GCGaCGGCGGCGGcGGCGGC-GCC- -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 187447 | 0.79 | 0.063739 |
Target: 5'- gCGCCGuCUGCCGCCGCuCGgCGUCGCu- -3' miRNA: 3'- -GCGGC-GACGGCGGCG-GCgGCGGCGcc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 74106 | 0.78 | 0.070027 |
Target: 5'- uGCgGCUGCUcacccucgagcagGCCGCCGCCGCCGUc- -3' miRNA: 3'- gCGgCGACGG-------------CGGCGGCGGCGGCGcc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 194070 | 0.78 | 0.073657 |
Target: 5'- gCGCCGCcuucGUCGCCGCCaCCGCCGUGu -3' miRNA: 3'- -GCGGCGa---CGGCGGCGGcGGCGGCGCc -5' |
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10751 | 3' | -68.6 | NC_002794.1 | + | 101566 | 0.78 | 0.068525 |
Target: 5'- aCGCCgGCgggagUGCCgGCCGCCGCgGCCGgGGg -3' miRNA: 3'- -GCGG-CG-----ACGG-CGGCGGCGgCGGCgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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