miRNA display CGI


Results 21 - 40 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 11789 0.83 0.029035
Target:  5'- uCGCCGCgguguccguggcGCCGCCGCCGCCGUCGCc- -3'
miRNA:   3'- -GCGGCGa-----------CGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 58011 0.83 0.029178
Target:  5'- uCGCCGCcgggGCCGCCGCCGgcgaacCCGCCGCGc -3'
miRNA:   3'- -GCGGCGa---CGGCGGCGGC------GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 66708 0.83 0.029905
Target:  5'- aCGCCGCgcccggcacgGCCGCCGCCaCCGCCgGCGGu -3'
miRNA:   3'- -GCGGCGa---------CGGCGGCGGcGGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 192133 0.83 0.03065
Target:  5'- uGCUGCUGuuGCUGCUGCCGgCGCGGu -3'
miRNA:   3'- gCGGCGACggCGGCGGCGGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 128863 0.83 0.032116
Target:  5'- aCGCCGCUGCCGCCGUgacccuuUGCCGCUGUacGGa -3'
miRNA:   3'- -GCGGCGACGGCGGCG-------GCGGCGGCG--CC- -5'
10751 3' -68.6 NC_002794.1 + 63377 0.83 0.032995
Target:  5'- gCGCCGCUGCC-CCGCCGCC-CCGCu- -3'
miRNA:   3'- -GCGGCGACGGcGGCGGCGGcGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 192312 0.83 0.033816
Target:  5'- uCGuCCGCgcucGCCGCCGCCGCCGCuuccuccucuuCGCGGa -3'
miRNA:   3'- -GC-GGCGa---CGGCGGCGGCGGCG-----------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 130648 0.82 0.034656
Target:  5'- cCGcCCGCcGCC-CCGCCGCCgGCCGCGGg -3'
miRNA:   3'- -GC-GGCGaCGGcGGCGGCGG-CGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 16568 0.82 0.038227
Target:  5'- cCGCCGCcGCCGCCaccaccGCCGCCGCCGUc- -3'
miRNA:   3'- -GCGGCGaCGGCGG------CGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 107269 0.82 0.038227
Target:  5'- aGCCGC-GCCGuCCGCCGCCGUCGCc- -3'
miRNA:   3'- gCGGCGaCGGC-GGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 12748 0.82 0.039079
Target:  5'- cCGCUaccaggaGCUGCCGCUcuuGCCGCCGCCGCGc -3'
miRNA:   3'- -GCGG-------CGACGGCGG---CGGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 16487 0.82 0.040146
Target:  5'- cCGCCGCcuccGCCGCCaCCGCCGCCGCc- -3'
miRNA:   3'- -GCGGCGa---CGGCGGcGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 127179 0.81 0.042158
Target:  5'- uCGCCGCaGUCGUCGCCGCgGCCGCa- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGgCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 118199 0.81 0.04427
Target:  5'- cCGUCGCcGCCGCCGUCGCC-UCGCGGa -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGcGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 193962 0.81 0.045363
Target:  5'- cCGCCGCcaCCGCCGUCaCCGCCGCGGc -3'
miRNA:   3'- -GCGGCGacGGCGGCGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 127339 0.81 0.046484
Target:  5'- gCGCCGCUGCCGagaCGCuCGCgGCgGCGGc -3'
miRNA:   3'- -GCGGCGACGGCg--GCG-GCGgCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 18668 0.81 0.047631
Target:  5'- uCGCCGCUuccucgGCUGCCGCCGCCGUCuccggcacgGCGGc -3'
miRNA:   3'- -GCGGCGA------CGGCGGCGGCGGCGG---------CGCC- -5'
10751 3' -68.6 NC_002794.1 + 192073 0.81 0.047631
Target:  5'- uGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 192049 0.81 0.047631
Target:  5'- gGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 192097 0.81 0.047631
Target:  5'- uGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.