miRNA display CGI


Results 41 - 60 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 192049 0.81 0.047631
Target:  5'- gGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 115305 0.8 0.048806
Target:  5'- cCGCUGC-GCCGCCGuCCGCacgguCGCCGCGGc -3'
miRNA:   3'- -GCGGCGaCGGCGGC-GGCG-----GCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 61870 0.8 0.048806
Target:  5'- aCGCCGCgcGCCGUCGUCGgCGCCGCGcGg -3'
miRNA:   3'- -GCGGCGa-CGGCGGCGGCgGCGGCGC-C- -5'
10751 3' -68.6 NC_002794.1 + 184453 0.8 0.050009
Target:  5'- gCGCCGCUGCCGcCCGCgGgCCGCgcgaacggcgCGCGGg -3'
miRNA:   3'- -GCGGCGACGGC-GGCGgC-GGCG----------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 63478 0.8 0.050009
Target:  5'- gGCgGCgGCCGCCGUCGacgaCGCCGCGGc -3'
miRNA:   3'- gCGgCGaCGGCGGCGGCg---GCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 186096 0.8 0.052503
Target:  5'- gGgCGCUucGUCGCCGUCGCCGCCGcCGGg -3'
miRNA:   3'- gCgGCGA--CGGCGGCGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 151563 0.8 0.053404
Target:  5'- uGCUGCUGacguagCGCCccccggcggcgcgcGCCGCCGCCGCGGg -3'
miRNA:   3'- gCGGCGACg-----GCGG--------------CGGCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192237 0.8 0.053794
Target:  5'- uCGgCGCUGCCGUCGCCGaCGgCGCGGu -3'
miRNA:   3'- -GCgGCGACGGCGGCGGCgGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 149220 0.8 0.056471
Target:  5'- gGCCggaaGCgaggcGCCGCCGCCGUCGCCGgGGu -3'
miRNA:   3'- gCGG----CGa----CGGCGGCGGCGGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 103946 0.79 0.060582
Target:  5'- gGCCGCcGCCGCuCGCCaGCCGCCggcgcuucagacuGCGGg -3'
miRNA:   3'- gCGGCGaCGGCG-GCGG-CGGCGG-------------CGCC- -5'
10751 3' -68.6 NC_002794.1 + 12165 0.79 0.060729
Target:  5'- uCGCCcggaucGUcGCCGCCGaCGCCGCCGCGGc -3'
miRNA:   3'- -GCGG------CGaCGGCGGCgGCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 194010 0.79 0.062216
Target:  5'- uCGCCuucGCgGCCGCCGCCGCCGgCGCc- -3'
miRNA:   3'- -GCGG---CGaCGGCGGCGGCGGCgGCGcc -5'
10751 3' -68.6 NC_002794.1 + 49384 0.79 0.063739
Target:  5'- aGCgCGCcagGCCGCCGCCGUCggccacggcgGCCGCGGc -3'
miRNA:   3'- gCG-GCGa--CGGCGGCGGCGG----------CGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 187447 0.79 0.063739
Target:  5'- gCGCCGuCUGCCGCCGCuCGgCGUCGCu- -3'
miRNA:   3'- -GCGGC-GACGGCGGCG-GCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 105495 0.79 0.066893
Target:  5'- gGUCGUggaGCCGCCGCCGCCGgUCGCGc -3'
miRNA:   3'- gCGGCGa--CGGCGGCGGCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 60666 0.79 0.066893
Target:  5'- gCGCgCGCcGCCGCCGCCuCCGUCGaCGGg -3'
miRNA:   3'- -GCG-GCGaCGGCGGCGGcGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 187579 0.79 0.066893
Target:  5'- cCGCCGUcGgCGCgGCCGCCGUCGCGa -3'
miRNA:   3'- -GCGGCGaCgGCGgCGGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 101566 0.78 0.068525
Target:  5'- aCGCCgGCgggagUGCCgGCCGCCGCgGCCGgGGg -3'
miRNA:   3'- -GCGG-CG-----ACGG-CGGCGGCGgCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 74106 0.78 0.070027
Target:  5'- uGCgGCUGCUcacccucgagcagGCCGCCGCCGCCGUc- -3'
miRNA:   3'- gCGgCGACGG-------------CGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 188333 0.78 0.070196
Target:  5'- uCGCCGCcGCCGgCGgCGCCGUCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCgGCgGCGGCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.