miRNA display CGI


Results 61 - 80 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 62583 0.78 0.070196
Target:  5'- gCGCCGCcGCCGCCGacgccagggccaCCGCCGCCuuCGGa -3'
miRNA:   3'- -GCGGCGaCGGCGGC------------GGCGGCGGc-GCC- -5'
10751 3' -68.6 NC_002794.1 + 55008 0.78 0.073657
Target:  5'- uCGCCggGCguccGCCGCCG-CGCCGCCGCGa -3'
miRNA:   3'- -GCGG--CGa---CGGCGGCgGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 194070 0.78 0.073657
Target:  5'- gCGCCGCcuucGUCGCCGCCaCCGCCGUGu -3'
miRNA:   3'- -GCGGCGa---CGGCGGCGGcGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 41242 0.78 0.075448
Target:  5'- aCGCCGCgGCCGCCGacgccggcggcCCGUCGUCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCGGC-----------GGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 110268 0.77 0.078966
Target:  5'- gCGUCGCgacgGCgGCCGCCGUCcucgggcccgagaGCCGCGGg -3'
miRNA:   3'- -GCGGCGa---CGgCGGCGGCGG-------------CGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 193399 0.77 0.081074
Target:  5'- cCGCCucgcGCUcGCCuCCGCCGCCGCCGCc- -3'
miRNA:   3'- -GCGG----CGA-CGGcGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 16809 0.77 0.081074
Target:  5'- aCGCC-CaGCCGCCcCCGCCGCCGCa- -3'
miRNA:   3'- -GCGGcGaCGGCGGcGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 102082 0.77 0.081074
Target:  5'- uGCCGCggGCCGacgaGCCGCCGCCcacgguGCGGg -3'
miRNA:   3'- gCGGCGa-CGGCgg--CGGCGGCGG------CGCC- -5'
10751 3' -68.6 NC_002794.1 + 65736 0.77 0.084439
Target:  5'- uGCCGUccgGCCuccgacggccccgcGCCGCCGCCGCcCGUGGu -3'
miRNA:   3'- gCGGCGa--CGG--------------CGGCGGCGGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 184538 0.77 0.085046
Target:  5'- aCGCCGCccaccGCCGCCucuucggacGCCucacgcGCCGCCGCGGc -3'
miRNA:   3'- -GCGGCGa----CGGCGG---------CGG------CGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 80423 0.77 0.085046
Target:  5'- gCGCCggGCgggGCCGCCGCCgGCgGCCGcCGGc -3'
miRNA:   3'- -GCGG--CGa--CGGCGGCGG-CGgCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 181768 0.77 0.087101
Target:  5'- aCGCCGaUGgCGCCG-CGCCGCCGCGu -3'
miRNA:   3'- -GCGGCgACgGCGGCgGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 82917 0.77 0.087101
Target:  5'- uCGCgGCc-CCGCCGCCGUCGCCGCu- -3'
miRNA:   3'- -GCGgCGacGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 46315 0.77 0.087101
Target:  5'- gCGCgGCgGCgaCGgCGCCGUCGCCGCGGa -3'
miRNA:   3'- -GCGgCGaCG--GCgGCGGCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 156408 0.77 0.087101
Target:  5'- gCGCCGCgGCCGCgGCCaCgGCCgGCGGg -3'
miRNA:   3'- -GCGGCGaCGGCGgCGGcGgCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 34248 0.77 0.089203
Target:  5'- gCGCgGCUGCCGCCGCagGCgGaCCGCGc -3'
miRNA:   3'- -GCGgCGACGGCGGCGg-CGgC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 84084 0.77 0.089203
Target:  5'- cCGCCGC-GCCGCCGCCacCCGCCucccCGGa -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGc-GGCGGc---GCC- -5'
10751 3' -68.6 NC_002794.1 + 105904 0.77 0.091353
Target:  5'- uCGCCGCggcgGCgGCgcuacCGCCGCCGCCGgaCGGg -3'
miRNA:   3'- -GCGGCGa---CGgCG-----GCGGCGGCGGC--GCC- -5'
10751 3' -68.6 NC_002794.1 + 34864 0.77 0.091353
Target:  5'- gCGCCGCgGgCGCCGCggaCGCCGCgaaCGCGGa -3'
miRNA:   3'- -GCGGCGaCgGCGGCG---GCGGCG---GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 112221 0.76 0.092887
Target:  5'- gGcCCGCUccagggcguccaggGCCGCCGCgaaCGCCGCCgGCGGg -3'
miRNA:   3'- gC-GGCGA--------------CGGCGGCG---GCGGCGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.