miRNA display CGI


Results 81 - 100 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 16877 0.76 0.093108
Target:  5'- cCGCCGCggcagcaaccaCCGCCGCCGCgacaGCCGCGa -3'
miRNA:   3'- -GCGGCGac---------GGCGGCGGCGg---CGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 185554 0.76 0.093552
Target:  5'- gGCCGCgcGCC-CCGCC-CUGCCGCGGc -3'
miRNA:   3'- gCGGCGa-CGGcGGCGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 77949 0.76 0.093552
Target:  5'- gCGCCGCgaucGCCGCCGUCGCCgaGCCGacuccuccgccuCGGa -3'
miRNA:   3'- -GCGGCGa---CGGCGGCGGCGG--CGGC------------GCC- -5'
10751 3' -68.6 NC_002794.1 + 110317 0.76 0.095801
Target:  5'- -uCCGCUcGCCGCCGCgaCGCCGC-GCGGg -3'
miRNA:   3'- gcGGCGA-CGGCGGCG--GCGGCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 188401 0.76 0.095801
Target:  5'- uCGCCGCagacggGaCCGCCGCCGCaacuGCCGCaGGu -3'
miRNA:   3'- -GCGGCGa-----C-GGCGGCGGCGg---CGGCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 100298 0.76 0.097869
Target:  5'- gGCUGgUGCCGCCuCCGCCGCuggcacgCGCGGc -3'
miRNA:   3'- gCGGCgACGGCGGcGGCGGCG-------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 72910 0.76 0.098101
Target:  5'- cCGUCGC-GCuCGCCGCCGCCGUCGgagcCGGc -3'
miRNA:   3'- -GCGGCGaCG-GCGGCGGCGGCGGC----GCC- -5'
10751 3' -68.6 NC_002794.1 + 192639 0.76 0.098101
Target:  5'- gGCCGCU-CCaGCCG-CGCCGCCGCGc -3'
miRNA:   3'- gCGGCGAcGG-CGGCgGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 106208 0.76 0.098101
Target:  5'- aCGCCGUUaguccaCCGUCGCCGCgGCCGCGc -3'
miRNA:   3'- -GCGGCGAc-----GGCGGCGGCGgCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 17215 0.76 0.100454
Target:  5'- cCGCCGCcaccaCCGCCGCCaCCGCCGCc- -3'
miRNA:   3'- -GCGGCGac---GGCGGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 113196 0.76 0.102859
Target:  5'- gCGCCuCcGCCGCCGCCaCCGCCGCc- -3'
miRNA:   3'- -GCGGcGaCGGCGGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 81330 0.76 0.102859
Target:  5'- aGCCGCgguacGCU-CCGCCGUCGCCGaCGGg -3'
miRNA:   3'- gCGGCGa----CGGcGGCGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 60048 0.76 0.102859
Target:  5'- uCGCUGCUcaccuucgGCCGCCGCaccguGCCGCCGCc- -3'
miRNA:   3'- -GCGGCGA--------CGGCGGCGg----CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 114443 0.76 0.102859
Target:  5'- uGCCGCacgucguggUGCUGUCGCCGCaGCCGCaGGa -3'
miRNA:   3'- gCGGCG---------ACGGCGGCGGCGgCGGCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 47409 0.76 0.105319
Target:  5'- aGCCGCcGUCGgCGCCGUCGC-GCGGa -3'
miRNA:   3'- gCGGCGaCGGCgGCGGCGGCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192359 0.76 0.105319
Target:  5'- gGCCuCcGCCGCCGCCGaCCGagCGCGGg -3'
miRNA:   3'- gCGGcGaCGGCGGCGGC-GGCg-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 124400 0.76 0.105319
Target:  5'- gCGUCGCcgGUCGUcggggCGCCGuCCGCCGCGGu -3'
miRNA:   3'- -GCGGCGa-CGGCG-----GCGGC-GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 186064 0.76 0.107834
Target:  5'- gGuCCGUgGCCaCCGCCGCCGCCGCc- -3'
miRNA:   3'- gC-GGCGaCGGcGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 49015 0.76 0.107834
Target:  5'- gCGCCGCggcgGCCGCggCGUCGuCCGgCGCGGu -3'
miRNA:   3'- -GCGGCGa---CGGCG--GCGGC-GGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 144904 0.75 0.110145
Target:  5'- gCGCCGCUggGCC-CCGCCGCCGgcaccaaCCGCGc -3'
miRNA:   3'- -GCGGCGA--CGGcGGCGGCGGC-------GGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.