miRNA display CGI


Results 21 - 40 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 117369 0.66 0.455749
Target:  5'- aGCgGCggGCCGCCugcacgGUCGCgGCgaaGCGGg -3'
miRNA:   3'- gCGgCGa-CGGCGG------CGGCGgCGg--CGCC- -5'
10751 3' -68.6 NC_002794.1 + 90773 0.66 0.455749
Target:  5'- gCGCCGCUGCUGguggacCUGaCgGUCGaCCGCGa -3'
miRNA:   3'- -GCGGCGACGGC------GGC-GgCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 90738 0.66 0.455749
Target:  5'- uGUCGCUGUgCGaCCgGUCGUCGuCCGUGGc -3'
miRNA:   3'- gCGGCGACG-GC-GG-CGGCGGC-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 31345 0.66 0.455749
Target:  5'- cCGCCGUguCCGCCGcCCGCuCGUCGaaGu -3'
miRNA:   3'- -GCGGCGacGGCGGC-GGCG-GCGGCgcC- -5'
10751 3' -68.6 NC_002794.1 + 17434 0.66 0.455749
Target:  5'- -uCCGC-GCCGCCGgCGCuCGggcCCGCGa -3'
miRNA:   3'- gcGGCGaCGGCGGCgGCG-GC---GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 143498 0.66 0.455749
Target:  5'- gGCCGCgggGCUGCagaugaggaagCGCaCGUCGcCCGCGu -3'
miRNA:   3'- gCGGCGa--CGGCG-----------GCG-GCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 114117 0.66 0.455749
Target:  5'- gCGCCGacagcucguucUUGCCGCCgGCCagggcgcgcaGgCGCCGCGu -3'
miRNA:   3'- -GCGGC-----------GACGGCGG-CGG----------CgGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 112690 0.66 0.455749
Target:  5'- uGCCGCgucaCCGCgGCCaGCUuCuCGCGGg -3'
miRNA:   3'- gCGGCGac--GGCGgCGG-CGGcG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 152780 0.66 0.455749
Target:  5'- aCGCCagacGCUGaCCGCgCGCgaGCUGCUGCu- -3'
miRNA:   3'- -GCGG----CGAC-GGCG-GCGg-CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 144033 0.66 0.455749
Target:  5'- aGCCGUaucuCCGgCGCCugGCCGCCGuCGa -3'
miRNA:   3'- gCGGCGac--GGCgGCGG--CGGCGGC-GCc -5'
10751 3' -68.6 NC_002794.1 + 148292 0.66 0.454923
Target:  5'- aGCCGCucgacgUGCUGuacgaccCCGaCgGCCGaCCGCGGu -3'
miRNA:   3'- gCGGCG------ACGGC-------GGC-GgCGGC-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 111855 0.66 0.44752
Target:  5'- aGCCGUcGCCaCCGCCaggGCCuuguaGCgCGCGGu -3'
miRNA:   3'- gCGGCGaCGGcGGCGG---CGG-----CG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 81800 0.66 0.44752
Target:  5'- -uCCGCUGCCucaGCCGCgCGCa-CCGCa- -3'
miRNA:   3'- gcGGCGACGG---CGGCG-GCGgcGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 110426 0.66 0.44752
Target:  5'- aGCCGg-GCgGCUGUCGUCGUCggugGCGGa -3'
miRNA:   3'- gCGGCgaCGgCGGCGGCGGCGG----CGCC- -5'
10751 3' -68.6 NC_002794.1 + 101801 0.66 0.44752
Target:  5'- gCGCCGCUGguuggCGCaGCgGCgCGCCGUGc -3'
miRNA:   3'- -GCGGCGACg----GCGgCGgCG-GCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 193987 0.66 0.44752
Target:  5'- nGCCGCUaCCGCCGCC-CC-CgGCu- -3'
miRNA:   3'- gCGGCGAcGGCGGCGGcGGcGgCGcc -5'
10751 3' -68.6 NC_002794.1 + 146345 0.66 0.44752
Target:  5'- cCGUCGUcGaUCGCgGCgGCCGCC-CGGg -3'
miRNA:   3'- -GCGGCGaC-GGCGgCGgCGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 40332 0.66 0.44752
Target:  5'- cCGCCGCgcggacgcGCCaCCGgCGgCGCCGCc- -3'
miRNA:   3'- -GCGGCGa-------CGGcGGCgGCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 72348 0.66 0.44752
Target:  5'- aGCCGgUGgCGCUGCaccgucuGCgCGuCCGCGGc -3'
miRNA:   3'- gCGGCgACgGCGGCGg------CG-GC-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 77032 0.66 0.44752
Target:  5'- uCGaCCGCUcGUCcCCGCuCG-UGCCGCGGa -3'
miRNA:   3'- -GC-GGCGA-CGGcGGCG-GCgGCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.