miRNA display CGI


Results 41 - 60 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 40332 0.66 0.44752
Target:  5'- cCGCCGCgcggacgcGCCaCCGgCGgCGCCGCc- -3'
miRNA:   3'- -GCGGCGa-------CGGcGGCgGCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 72348 0.66 0.44752
Target:  5'- aGCCGgUGgCGCUGCaccgucuGCgCGuCCGCGGc -3'
miRNA:   3'- gCGGCgACgGCGGCGg------CG-GC-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 86719 0.66 0.446701
Target:  5'- aGCCGCccgGCCaccuagaGCCGa-GCCGaCCGCGa -3'
miRNA:   3'- gCGGCGa--CGG-------CGGCggCGGC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 135712 0.66 0.445067
Target:  5'- gCGCUcgaGCUGCUGCguagcaucugcaccUGCCG-CGCCGCGc -3'
miRNA:   3'- -GCGG---CGACGGCG--------------GCGGCgGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 107059 0.66 0.439373
Target:  5'- gGCgGCggGCgCGgCGCCGCCggcaugucggaGCCGaCGGg -3'
miRNA:   3'- gCGgCGa-CG-GCgGCGGCGG-----------CGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 63082 0.66 0.439373
Target:  5'- gGCCgGCUGUacuucagcgCGCUGCCGCa-CCGCGc -3'
miRNA:   3'- gCGG-CGACG---------GCGGCGGCGgcGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 101946 0.66 0.439373
Target:  5'- gGCaUGCUGCC-CUGCCuGCCcGUgGCGGc -3'
miRNA:   3'- gCG-GCGACGGcGGCGG-CGG-CGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 63708 0.66 0.439373
Target:  5'- aCGgCGCcGgCGCCGCCGgaCCGCCGa-- -3'
miRNA:   3'- -GCgGCGaCgGCGGCGGC--GGCGGCgcc -5'
10751 3' -68.6 NC_002794.1 + 145838 0.66 0.439373
Target:  5'- gCGUCGacgGUCGCCacgcucgacgaGCCGCCgaggGCCGCGa -3'
miRNA:   3'- -GCGGCga-CGGCGG-----------CGGCGG----CGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 150537 0.66 0.439373
Target:  5'- aGCCGg-GCCGgCGCCaugGCCGUCuCGGc -3'
miRNA:   3'- gCGGCgaCGGCgGCGG---CGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 188294 0.66 0.439373
Target:  5'- gCGCCGCgcGCCGgacccggcCCGUCGUCGUCGUc- -3'
miRNA:   3'- -GCGGCGa-CGGC--------GGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 58314 0.66 0.439373
Target:  5'- cCGCCGCgcuCUGCaCGCCGCgCGUgcuCGuCGGg -3'
miRNA:   3'- -GCGGCGac-GGCG-GCGGCG-GCG---GC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 80041 0.66 0.439373
Target:  5'- uCGCCGacagUGCCGgCGCgaGCCGCGGu -3'
miRNA:   3'- -GCGGCgacgGCGGCgGCGg-CGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 137143 0.66 0.439373
Target:  5'- cCGcCCGCccgGCCgGCCGCCcucggucccgGCCGCuCGCu- -3'
miRNA:   3'- -GC-GGCGa--CGG-CGGCGG----------CGGCG-GCGcc -5'
10751 3' -68.6 NC_002794.1 + 146264 0.66 0.439373
Target:  5'- uCGUCGUcGUCGUCGUCGUCGUCGuCGa -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGC-GCc -5'
10751 3' -68.6 NC_002794.1 + 36135 0.66 0.432114
Target:  5'- cCGCCGguagucuuucuccucCU-CCGCCGCCGCCucccccccacccgcGCCcCGGg -3'
miRNA:   3'- -GCGGC---------------GAcGGCGGCGGCGG--------------CGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 134154 0.66 0.431312
Target:  5'- gGuCCGUguUGCUgGCCGUgGCCGC-GCGGa -3'
miRNA:   3'- gC-GGCG--ACGG-CGGCGgCGGCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 35767 0.66 0.431312
Target:  5'- aCGUCGCggcaCCGUCGCCGgCGUCGUc- -3'
miRNA:   3'- -GCGGCGac--GGCGGCGGCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 45893 0.66 0.431312
Target:  5'- cCGaCCGa-GCC-CCGcCCGCCGCCGgcacCGGg -3'
miRNA:   3'- -GC-GGCgaCGGcGGC-GGCGGCGGC----GCC- -5'
10751 3' -68.6 NC_002794.1 + 61563 0.66 0.431312
Target:  5'- nGCgGCgGCCGCCGUCGaacaccuagaCCcCCGCGa -3'
miRNA:   3'- gCGgCGaCGGCGGCGGC----------GGcGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.