miRNA display CGI


Results 61 - 80 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 45893 0.66 0.431312
Target:  5'- cCGaCCGa-GCC-CCGcCCGCCGCCGgcacCGGg -3'
miRNA:   3'- -GC-GGCgaCGGcGGC-GGCGGCGGC----GCC- -5'
10751 3' -68.6 NC_002794.1 + 35767 0.66 0.431312
Target:  5'- aCGUCGCggcaCCGUCGCCGgCGUCGUc- -3'
miRNA:   3'- -GCGGCGac--GGCGGCGGCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 134154 0.66 0.431312
Target:  5'- gGuCCGUguUGCUgGCCGUgGCCGC-GCGGa -3'
miRNA:   3'- gC-GGCG--ACGG-CGGCGgCGGCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 69129 0.66 0.431312
Target:  5'- uCGCCGCcGaCCGCCgGCCaaGCCGCuuCGCc- -3'
miRNA:   3'- -GCGGCGaC-GGCGG-CGG--CGGCG--GCGcc -5'
10751 3' -68.6 NC_002794.1 + 114653 0.66 0.423338
Target:  5'- uGCCGgUGCUGuUCGCgCGCgCGCCGguacuCGGa -3'
miRNA:   3'- gCGGCgACGGC-GGCG-GCG-GCGGC-----GCC- -5'
10751 3' -68.6 NC_002794.1 + 91235 0.66 0.423338
Target:  5'- gCGCgGCgGCCGUCggGCUG-CGCuCGCGGa -3'
miRNA:   3'- -GCGgCGaCGGCGG--CGGCgGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 13655 0.66 0.423338
Target:  5'- aGCUGUccuggcacgUGCCGCCGCCacuCCgGUCGaCGGa -3'
miRNA:   3'- gCGGCG---------ACGGCGGCGGc--GG-CGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 118266 0.66 0.423338
Target:  5'- gGCCGggGCgGCggCGCCGgCGUCGgGGa -3'
miRNA:   3'- gCGGCgaCGgCG--GCGGCgGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 145579 0.66 0.423338
Target:  5'- gCGCCGaCggaGCgGCgGCCgGCUcCCGCGGa -3'
miRNA:   3'- -GCGGC-Ga--CGgCGgCGG-CGGcGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 125953 0.66 0.423338
Target:  5'- gGCCGcCUGCgCGCuCGUCGCCgaguuccuGCUGCa- -3'
miRNA:   3'- gCGGC-GACG-GCG-GCGGCGG--------CGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 183840 0.66 0.423338
Target:  5'- uCGCCGaCgacagGCUcuCCGUCGCgGCCGuCGGg -3'
miRNA:   3'- -GCGGC-Ga----CGGc-GGCGGCGgCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 156669 0.66 0.423338
Target:  5'- uCGCCGUUcGCgaucgguacuCGCCcgucuucucgGCCGCCGCCGUc- -3'
miRNA:   3'- -GCGGCGA-CG----------GCGG----------CGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 190107 0.66 0.423338
Target:  5'- aCGCC-CcGCCGuCCG-CGCCGaaGCGGu -3'
miRNA:   3'- -GCGGcGaCGGC-GGCgGCGGCggCGCC- -5'
10751 3' -68.6 NC_002794.1 + 149389 0.66 0.423338
Target:  5'- -aCCGCUGaCCGgcaaCGUCGCCGCgCGUGu -3'
miRNA:   3'- gcGGCGAC-GGCg---GCGGCGGCG-GCGCc -5'
10751 3' -68.6 NC_002794.1 + 18721 0.66 0.420963
Target:  5'- aCGUCGgaGCCGacgaGCCGCCccaacgccacgacgGCCgGCGGc -3'
miRNA:   3'- -GCGGCgaCGGCgg--CGGCGG--------------CGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 193365 0.67 0.415453
Target:  5'- aGCCGgUGCCacggGCCGCgcuccuCGCCGUCGUn- -3'
miRNA:   3'- gCGGCgACGG----CGGCG------GCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 58770 0.67 0.415453
Target:  5'- aGCCGCUGCUGgccuaCGUCaGCgCGCUGCa- -3'
miRNA:   3'- gCGGCGACGGCg----GCGG-CG-GCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 75362 0.67 0.415453
Target:  5'- uCGCCaCcgacCCGCCGCgGCCGgCgGCGGc -3'
miRNA:   3'- -GCGGcGac--GGCGGCGgCGGC-GgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 32564 0.67 0.415453
Target:  5'- aGCCGCggauaGUCGCgCGCgGCggUGCCGgGGc -3'
miRNA:   3'- gCGGCGa----CGGCG-GCGgCG--GCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 184951 0.67 0.415453
Target:  5'- aGCUGC-GCCGgcCCGCgcaGCCGCuCGuCGGg -3'
miRNA:   3'- gCGGCGaCGGC--GGCGg--CGGCG-GC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.