miRNA display CGI


Results 81 - 100 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 32564 0.67 0.415453
Target:  5'- aGCCGCggauaGUCGCgCGCgGCggUGCCGgGGc -3'
miRNA:   3'- gCGGCGa----CGGCG-GCGgCG--GCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 195312 0.67 0.415453
Target:  5'- cCGCCGC-GUCGCCuUCGCCGaguaGUGGc -3'
miRNA:   3'- -GCGGCGaCGGCGGcGGCGGCgg--CGCC- -5'
10751 3' -68.6 NC_002794.1 + 194397 0.67 0.414669
Target:  5'- gCGCCGCccgGUCGuucgcguCCGCCaCCGCCGUa- -3'
miRNA:   3'- -GCGGCGa--CGGC-------GGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 37408 0.67 0.407658
Target:  5'- gCGcCCGCUGCaGCCGguccagCGCCGuCCGCa- -3'
miRNA:   3'- -GC-GGCGACGgCGGCg-----GCGGC-GGCGcc -5'
10751 3' -68.6 NC_002794.1 + 18246 0.67 0.407658
Target:  5'- gCGCgCGCgGCCGaCCGgCGaCCGCgagaugCGCGGc -3'
miRNA:   3'- -GCG-GCGaCGGC-GGCgGC-GGCG------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192386 0.67 0.407658
Target:  5'- gGCUGaCcGCCaCCGCCG-CGCCGgGGu -3'
miRNA:   3'- gCGGC-GaCGGcGGCGGCgGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 11080 0.67 0.407658
Target:  5'- aCGCCGcCUGCC-UCGUCGUCGgCGCc- -3'
miRNA:   3'- -GCGGC-GACGGcGGCGGCGGCgGCGcc -5'
10751 3' -68.6 NC_002794.1 + 93456 0.67 0.407658
Target:  5'- uCGaCgGC-GUC-CCGCCGCCGCaCGUGGc -3'
miRNA:   3'- -GC-GgCGaCGGcGGCGGCGGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 48586 0.67 0.407658
Target:  5'- aGCCGgaGgaGCgGCgCGUCGCCGuCGGc -3'
miRNA:   3'- gCGGCgaCggCGgCG-GCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 53914 0.67 0.407658
Target:  5'- uCGUCGCcGUCGgCGgCGCCGCCGa-- -3'
miRNA:   3'- -GCGGCGaCGGCgGCgGCGGCGGCgcc -5'
10751 3' -68.6 NC_002794.1 + 101254 0.67 0.407658
Target:  5'- gCGCaGCgggggGCCGCCcCCGgCGCCgGUGGc -3'
miRNA:   3'- -GCGgCGa----CGGCGGcGGCgGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 105658 0.67 0.407658
Target:  5'- uCGCCGCgGCgCGCucCGCCcggaCCGCCG-GGa -3'
miRNA:   3'- -GCGGCGaCG-GCG--GCGGc---GGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 107217 0.67 0.407658
Target:  5'- gCGCCGCcggGCgGCgCGCgacgggggCGgCGUCGCGGa -3'
miRNA:   3'- -GCGGCGa--CGgCG-GCG--------GCgGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 99547 0.67 0.407658
Target:  5'- gGCCGCggaaaCCG-CGCgCGCCcuCCGCGGg -3'
miRNA:   3'- gCGGCGac---GGCgGCG-GCGGc-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 86845 0.67 0.407658
Target:  5'- gGUCgGCgGCC-CCGCCGggauuggguCUGCCGCGGc -3'
miRNA:   3'- gCGG-CGaCGGcGGCGGC---------GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 150347 0.67 0.406884
Target:  5'- gGCUGuCUGCuCGUCGCgGCCGagaaccuCCGCGu -3'
miRNA:   3'- gCGGC-GACG-GCGGCGgCGGC-------GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 99215 0.67 0.400722
Target:  5'- aCGCCgaGCgcgauucguauaagaGCgGaCCGCCGgaccCCGCCGCGGa -3'
miRNA:   3'- -GCGG--CGa--------------CGgC-GGCGGC----GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 107759 0.67 0.399956
Target:  5'- gCGCCGCUGgCUGgaGCgCGCuCGCC-CGGc -3'
miRNA:   3'- -GCGGCGAC-GGCggCG-GCG-GCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 83953 0.67 0.399956
Target:  5'- gGaCCGCcuggGCCGCCuggagcGCCuggaCCGCCGCGa -3'
miRNA:   3'- gC-GGCGa---CGGCGG------CGGc---GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 82688 0.67 0.399956
Target:  5'- aCGCCGUUcgcccggcgcGCCGagacgCGCCGaggaCGCCGCGc -3'
miRNA:   3'- -GCGGCGA----------CGGCg----GCGGCg---GCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.